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Job DescriptionP0AAG0
Confidence100.00%DateThu Jan 5 11:12:50 GMT 2012
Rank8Aligned Residues262
% Identity26%Templatec1z47B_
PDB info PDB header:ligand binding proteinChain: B: PDB Molecule:putative abc-transporter atp-binding protein; PDBTitle: structure of the atpase subunit cysa of the putative2 sulfate atp-binding cassette (abc) transporter from3 alicyclobacillus acidocaldarius
Resolution1.90 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   4.....10.........20.........30.........40.........50.........60.........70.........80...
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Query Sequence  LNVDKLSVHFGDESAPFRAVDRISYSVKQGEVVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKLEFNGQDLQRISEKER
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Template Sequence  IEFVGVEKIYPGGA. . . RSVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERP. . . . TKGDVWIGGKRVTDLPPQKR
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TTST...T

TT

STTSSTSS

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GGGS
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   15....20........ .30.........40.........50.........60....... ..70.........80.......
 
   84.....90.........100.........110.........120.........130.........140.........150.........160...
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Query Sequence  RNLVGAEVAMIFQDPMTSLNPCYTVGFQIMEAIKVHQGGNKSTRRQRAIDLLNQVGIPDPASRLDVYPHQLSGGMSQRVM
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Template Sequence  N. . . . . . VGLVFQN. . YALFQHMTVYDNVSFGLRE. KRVPKDEMDARVRELLRFMRL. . . ESYANRFPHELSGGQQQRVA
Template Known Secondary structure  S......TT..



TTS
TTGGG.TT

TT
...GGGTTS
GGGS
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   88 .90..... ....100.........110.... .....120.........130..... ....140.........150.....
 
   164.....170.........180.........190.........200.........210.........220.........230.........240...
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Query Sequence  IAMAIACRPKLLIADEPTTALDVTIQAQIIELLLELQQKENMALVLITHDLALVAEAAHKIIVMYAGQVVETGDAHAIFH
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Template Sequence  LARALAPRPQVLLFDEPFAAIDTQIRRELRTFVRQVHDEMGVTSVFVTHDQEEALEVADRVLVLHEGNVEQFGTPEEVYE
Template Known Secondary structure  TT

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   156...160.........170.........180.........190.........200.........210.........220.........230.....
 
   244.....250.........260..... ....270.........280....
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Query Sequence  APRHPYTQALLRALPEFAQDKE. . RLASLPGVVPGKYDRPNGC
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Template Sequence  KPGTLFVASFIGESNVWTRAVQNGRIEVAGAALPVDPAVSEGS
Template Known Secondary structure  S
SSSS


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   236...240.........250.........260.........270........
 
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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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