Job Description Q6BF17 Confidence 100.00% Date Thu Jan 5 12:37:31 GMT 2012 Rank 78 Aligned Residues 330 % Identity 21% Template c3ritE_ PDB info PDB header:isomerase Chain: E: PDB Molecule:dipeptide epimerase; PDBTitle: crystal structure of dipeptide epimerase from methylococcus capsulatus2 complexed with mg and dipeptide l-arg-d-lys Resolution 2.70 Å

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		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.																	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.							.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.
Predicted Secondary structure																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																							.	.	.	.	.	.
Query SS confidence																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																							.	.	.	.	.	.
Query Sequence		M	K	I	T	K	I	T	T	Y	R	L	P	P	R	W	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	M	F	L	K	I	E	T	D	E	G	V	V	G	W	G	E	P	V	I	E	G	R	.	.	.	.	.	.	A	R	T	V	E	A	A	V	H	E	L	G	D	Y	L	I	G	Q	D	P	S
Query Conservation																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																							.	.	.	.	.	.
Alig confidence																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																							.	.	.	.	.	.
Template Conservation
Template Sequence		M	K	I	A	D	I	Q	V	R	T	E	H	F	P	L	T	R	P	Y	R	I	A	F	R	S	I	E	E	I	D	N	L	I	V	E	I	R	T	A	D	G	L	L	G	L	G	A	A	S	P	E	R	H	V	T	G	E	T	L	E	A	C	H	A	A	L	D	H	D	R	L	G	W	L	M	G	R	D	I	R
Template Known Secondary structure																							T	T																T	T	S																									T		T	T	T	T	G	G	G	T	T			G	G
Template Predicted Secondary structure
Template SS confidence
		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80
		59	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	I	N	D	L	W	Q	V	M	Y	R	A	G	F	Y	R	G	G	P	I	L	M	S	A	I	A	G	I	D	Q	A	L	W	D	I	K	G	K	V	L	N	A	P	V	W	Q	L	M	G	G	L	V	R	D	K	I	K	A	Y	S	W	V	G	G	D	R	P	A	D	V	I	D	G	I	K	T	L	R	E	I
Query Conservation
Alig confidence																		.	.	.	.	.																														.
Template Conservation																		.	.	.	.	.																														.
Template Sequence		T	L	P	R	L	C	R	E	L	A	E	R	L	P	A	A	.	.	.	.	.	P	A	A	R	A	A	L	D	M	A	L	H	D	L	V	A	Q	C	L	G	L	P	L	V	E	I	L	G	R	.	A	H	D	S	L	P	T	S	V	T	I	G	I	K	P	V	E	E	T	L	A	E	A	R	E	H	L	A	L
Template Known Secondary structure		G												S	T	T		.	.	.	.	.																				T	S	B					S			.	S		S				B						S																T
Template Predicted Secondary structure																		.	.	.	.	.																														.
Template SS confidence
		81	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.						.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.		.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.
		139	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	F	D	T	F	K	L	N	G	C	E	E	L	G	L	I	D	N	S	R	A	V	D	A	A	V	N	T	V	A	Q	I	R	E	A	F	G	N	Q	I	E	F	G	L	D	F	H	G	R	V	S	A	P	M	A	K	V	L	I	K	E	L	E	P	Y	R	P	L	F	I	E	E	P	V	L	A	E	Q	A	E
Query Conservation
Alig confidence													.	.	.	.	.	.	.	.	.
Template Conservation													.	.	.	.	.	.	.	.	.
Template Sequence		G	F	R	V	L	K	V	K	L	C	G	.	.	.	.	.	.	.	.	.	D	E	E	Q	D	F	E	R	L	R	R	L	H	E	T	L	A	G	R	A	V	V	R	V	D	P	N	Q	S	Y	D	R	D	G	L	L	R	L	D	R	L	V	Q	E	L	G	I	E	F	I	E	Q	P	F	P	A	G	R	T	D
Template Known Secondary structure		T										S	.	.	.	.	.	.	.	.	.																S	S	S	S	S							T	T																		T								S		T	T
Template Predicted Secondary structure													.	.	.	.	.	.	.	.	.
Template SS confidence
		155	.	.	.	.	160	.	.	.	.	.										.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.
		219	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.		.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.		.	290	.	.	.	.	.	.
Predicted Secondary structure																										.																																															.
Query SS confidence																										.																																															.
Query Sequence		Y	Y	P	K	L	A	A	Q	T	H	I	P	L	A	A	G	E	R	M	F	S	R	F	D	.	F	K	R	V	L	E	A	G	G	I	S	I	L	Q	P	D	L	S	H	A	G	G	I	T	E	C	Y	K	I	A	G	M	A	E	A	Y	D	V	T	L	A	P	H	C	P	L	.	G	P	I	A	L	A	A	C
Query Conservation																										.																																															.
Alig confidence																										.																																															.
Template Conservation
Template Sequence		W	L	R	A	L	P	K	A	I	R	R	R	I	A	A	D	E	S	L	L	G	P	A	D	A	F	A	L	A	A	P	P	A	A	C	G	I	F	N	I	K	L	M	K	C	G	G	L	A	P	A	R	R	I	A	T	I	A	E	T	A	G	I	D	L	M	W	G	C	M	D	E	S	R	I	S	I	A	A	A
Template Known Secondary structure					T	S							T				S	T	T			S									S	S	S		S		S										T	S															T									S
Template Predicted Secondary structure
Template SS confidence
		226	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.
		297	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	H	I	D	F	V	S	Y	N	A	V	L	Q	E	Q	S	M	G	I	H	Y	N	K	G	A	E	L	L	D	F	V	K	N	K	E	D	F	S	M	V	G	G	F	F	K	P	L	T	K	P	G	L	G	V	E	I
Query Conservation
Alig confidence																	.	.	.	.	.	.	.
Template Conservation																	.	.	.	.	.	.	.
Template Sequence		L	H	A	A	L	A	C	P	A	T	R	Y	L	D	L	.	.	.	.	.	.	.	D	G	S	F	D	L	A	R	D	V	A	E	G	G	F	I	L	E	D	G	R	L	R	V	T	E	R	P	G	L	G	L	V	Y
Template Known Secondary structure							T		T	T							.	.	.	.	.	.	.	G	G	G	T	T	B	S			S				S	S				S	S						S	S	S	B	T
Template Predicted Secondary structure																	.	.	.	.	.	.	.
Template SS confidence
		306	.	.	.	310	.	.	.	.	.	.	.	.	.	320								.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions