Job Description Q6BF17 Confidence 100.00% Date Thu Jan 5 12:37:31 GMT 2012 Rank 63 Aligned Residues 355 % Identity 23% Template c3nxlD_ PDB info PDB header:lyase Chain: D: PDB Molecule:glucarate dehydratase; PDBTitle: crystal structure of glucarate dehydratase from burkholderia cepacia2 complexed with magnesium Resolution 1.89 Å

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		2	.	.	.	.	.	.	.	10	.	.	.	.	.																	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.
Predicted Secondary structure																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		K	I	T	K	I	T	T	Y	R	L	P	P	R	W	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	M	F	L	K	I	E	T	D	E	G	V	V	G	W	G	E	P	V	I	E	G	R	A	R	T	V	E	A	A	V	H	E	L	G	D	Y	L	I	G	Q	D	P	S	R	I	N	D	L	W	Q
Query Conservation																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																		.	.	.
Template Conservation																																																	.	.	.
Template Sequence		R	V	T	R	X	Q	V	I	P	V	A	G	R	D	S	X	L	L	N	L	C	G	A	H	A	P	Y	F	T	R	N	L	V	I	L	D	D	S	S	G	H	T	G	V	G	E	V	.	.	.	P	G	G	E	G	I	R	H	A	L	E	R	X	T	D	L	V	V	G	Q	S	I	G	R	Y	Q	A	T	L	N
Template Known Secondary structure		B																B			T	T					S												T	T	S								.	.	.																		T	T	S	B	G	G	G
Template Predicted Secondary structure																																																	.	.	.
Template SS confidence
		13	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.				60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.
		66	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.		.	.	110	.	.	.	.	.	.	.	.	.	120	.
Predicted Secondary structure																																												.															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																												.															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		V	M	Y	R	A	G	F	Y	R	G	G	P	I	L	M	S	A	I	A	G	I	D	Q	A	L	W	D	I	K	G	K	V	L	N	A	P	V	W	Q	L	M	G	.	G	L	V	R	D	K	I	K	A	Y	S	W	V	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																																												.															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence											.	.	.	.	.																													.															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation											.	.	.	.	.
Template Sequence		A	V	R	A	A	L	S	R	L	.	.	.	.	.	D	N	V	I	T	A	I	E	A	A	L	L	D	L	L	G	Q	H	L	D	V	P	V	A	A	L	L	G	E	G	Q	Q	R	D	A	V	P	X	L	A	Y	L	F	Y	I	G	D	R	G	R	T	D	L	P	Y	R	D	E	A	Q	A	R	T	P	W	F
Template Known Secondary structure										T	.	.	.	.	.																				T	S	B	G	G	G	G	S	T	T					S				B							B			G	G	G			S						T	T		S	S
Template Predicted Secondary structure											.	.	.	.	.
Template SS confidence
		90	.	.	.	.	.	.	.	.						.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.
								122	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.		.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.																		.
Query SS confidence		.	.	.	.	.	.																		.
Query Sequence		.	.	.	.	.	.	G	D	R	P	A	D	V	I	D	G	I	K	T	L	R	E	I	.	G	F	D	T	F	K	L	N	G	C	E	E	L	G	L	I	D	N	S	R	A	V	D	A	A	V	N	T	V	A	Q	I	R	E	A	F	G	N	Q	I	E	F	G	L	D	F	H	G	R	V	S	A	P	M	A	K
Query Conservation		.	.	.	.	.	.																		.
Alig confidence		.	.	.	.	.	.																		.													.	.	.	.	.	.	.	.																	.
Template Conservation																																						.	.	.	.	.	.	.	.																	.
Template Sequence		R	L	R	N	E	E	A	L	T	P	A	A	I	A	R	Q	A	E	A	A	V	D	R	Y	G	F	A	D	F	K	L	K	G	G	V	X	.	.	.	.	.	.	.	.	A	G	A	D	E	X	E	A	I	A	A	I	K	A	C	F	.	P	D	A	R	A	T	L	D	P	N	G	A	W	S	L	D	E	A	V
Template Known Secondary structure				T	T	S		B		S																									S	S	S	.	.	.	.	.	.	.	.																	.	T	T	S							T	T	B	B
Template Predicted Secondary structure																																						.	.	.	.	.	.	.	.																	.
Template SS confidence
		196	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.									.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.		.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.
		195	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.					.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270
Predicted Secondary structure																								.	.	.	.
Query SS confidence																								.	.	.	.
Query Sequence		V	L	I	K	E	L	E	P	Y	R	P	L	F	I	E	E	P	V	L	A	E	Q	.	.	.	.	A	E	Y	Y	P	K	L	A	A	Q	T	H	I	P	L	A	A	G	E	R	M	F	S	R	F	D	F	K	R	V	L	E	A	G	G	I	S	I	L	Q	P	D	L	S	H	A	G	G	I	T	E	C	Y	K
Query Conservation																								.	.	.	.
Alig confidence											.													.	.	.	.																																												.
Template Conservation											.																																																												.
Template Sequence		A	L	C	R	G	Q	G	H	L	.	L	A	Y	A	E	D	P	C	G	P	E	G	G	Y	S	G	R	E	V	X	A	E	F	R	R	A	T	G	I	P	T	A	T	N	X	I	A	T	D	W	R	Q	X	D	H	A	V	R	L	Q	A	V	D	I	P	L	A	D	P	.	H	F	W	T	X	Q	G	S	V	R
Template Known Secondary structure					T	T		T	T	T	.		S				S		B			B	T	T	B																				S	S	S			S											T			S			B				.
Template Predicted Secondary structure											.																																																												.
Template SS confidence
		267	.	.	270	.	.	.	.	.		.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.		.	.	.	.	.	340	.	.	.	.
		271	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.		.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																				.
Query SS confidence																				.
Query Sequence		I	A	G	M	A	E	A	Y	D	V	T	L	A	P	H	C	P	L	.	G	P	I	A	L	A	A	C	L	H	I	D	F	V	S	Y	N	A	V	L	Q	E	Q	S	M	G	I	H	Y	N	K	G	A	E	L	L	D	F	V	K	N	K	E	D	F	S	M	V	G	G	F	F	K	P	L	T	K	P	G	L	G
Query Conservation																				.
Alig confidence																				.																												.	.	.	.	.
Template Conservation																																																.	.	.	.	.
Template Sequence		L	A	Q	L	C	R	D	W	G	L	T	W	G	S	H	S	N	N	H	F	D	V	S	L	A	X	F	T	H	A	A	A	A	A	P	G	T	I	T	A	I	D	T	H	W	I	.	.	.	.	.	W	Q	E	G	D	A	R	L	T	R	E	P	L	K	I	V	G	G	Q	V	A	V	P	E	R	P	G	L	G
Template Known Secondary structure										T				B					S															T			S					B						.	.	.	.	.			B	T	T	B		S	B	S	S						T	T						S	S	S	B	T	S
Template Predicted Secondary structure																																																.	.	.	.	.
Template SS confidence
		345	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390						.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.
		350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.						.	.	380	.	.
Predicted Secondary structure																														.	.	.	.	.
Query SS confidence																														.	.	.	.	.
Query Sequence		V	E	I	D	E	A	K	V	I	E	F	S	K	N	A	P	D	W	R	N	P	L	W	R	H	E	D	N	.	.	.	.	.	S	V	A	E	W
Query Conservation																														.	.	.	.	.
Alig confidence													.	.																.	.	.	.	.
Template Conservation													.	.
Template Sequence		I	E	L	D	X	A	Q	V	E	A	A	.	.	H	A	L	Y	K	E	V	G	G	T	A	R	D	D	A	V	A	X	R	Y	L	V	P	G	W
Template Known Secondary structure				B									.	.									S	S				T								S	T	T
Template Predicted Secondary structure													.	.
Template SS confidence
		420	.	.	.	.	.	.	.	.	.	430			.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.