Job Description Q6BF17 Confidence 100.00% Date Thu Jan 5 12:37:31 GMT 2012 Rank 83 Aligned Residues 338 % Identity 19% Template c3n4fD_ PDB info PDB header:isomerase Chain: D: PDB Molecule:mandelate racemase/muconate lactonizing protein; PDBTitle: crystal structure of mandelate racemase/muconate lactonizing protein2 from geobacillus sp. y412mc10 Resolution 1.88 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.																			.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.
Predicted Secondary structure																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		M	K	I	T	K	I	T	T	Y	R	L	P	P	R	W	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	M	F	L	K	I	E	T	D	E	G	V	V	G	W	G	E	P	V	I	E	G	R	A	R	T	V	E	A	A	V	H	E	L	G	D	Y	L	I	G	Q	D	P	S	R	I	N	D
Query Conservation																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																							.	.	.	.	.	.	.	.	.															.	.
Template Conservation																																																									.	.	.	.	.	.	.	.	.															.	.
Template Sequence		W	K	V	E	K	I	E	F	A	K	L	T	G	E	R	A	R	S	A	G	A	N	G	R	I	G	V	H	G	K	S	C	T	V	D	I	A	R	I	T	I	D	G	Q	T	G	Y	G	S	S	I	H	X	T	P	.	.	.	.	.	.	.	.	.	E	W	A	E	D	V	I	G	R	R	L	L	D	L	.	.
Template Known Secondary structure			B																			B		S	S	S																	T	T									S				.	.	.	.	.	.	.	.	.					T	T	T	T		B	G	G	G	S	.	.
Template Predicted Secondary structure																																																									.	.	.	.	.	.	.	.	.															.	.
Template SS confidence
		12	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.										.	.	.	70	.	.	.	.	.	.	.	.	.	80
		63	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.						.	.	.	.	.	.	120	.	.	.	.											.	.	.
Predicted Secondary structure																																																					.	.	.	.	.												.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																					.	.	.	.	.												.	.	.	.	.	.	.	.	.	.
Query Sequence		L	W	Q	V	M	Y	R	A	G	F	Y	R	G	G	P	I	L	M	S	A	I	A	G	I	D	Q	A	L	W	D	I	K	G	K	V	L	N	A	P	V	W	Q	L	M	G	G	L	V	R	D	K	.	.	.	.	.	I	K	A	Y	S	W	V	G	G	D	R	.	.	.	.	.	.	.	.	.	.	P	A	D
Query Conservation																																																					.	.	.	.	.												.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.																																											.	.	.	.	.												.	.	.	.	.	.	.	.	.	.
Template Conservation		.	.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	F	D	D	R	G	R	L	R	E	A	Y	R	L	Q	L	E	Y	P	V	L	D	W	L	G	Q	R	Q	G	K	P	V	Y	D	L	V	S	G	A	H	L	E	T	G	A	S	L	V	V	P	C	Y	D	T	S	L	Y	F	D	D	L	H	L	A	D	E	R	A	A	V	A	L
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	B		T	T	S		B		T	T	T																	T		B					T			T	T	S		T	T														B			T	T
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.
Template SS confidence
											81	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.
		128	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	I	D	G	I	K	T	L	R	E	I	G	F	D	T	F	K	L	N	G	C	E	E	L	G	L	I	D	N	S	R	A	V	D	A	A	V	N	T	V	A	Q	I	R	E	A	F	G	N	Q	I	E	F	G	L	D	F	H	G	R	V	S	A	P	M	A	K	V	L	I	K	E	L	E	P	Y	R	P	L	F
Query Conservation
Alig confidence
Template Conservation
Template Sequence		X	Q	E	E	A	X	Q	G	Y	A	K	G	Q	R	H	F	K	I	K	V	G	R	G	G	R	H	X	P	L	W	E	G	T	K	R	D	I	A	I	V	R	G	I	S	E	V	A	G	P	A	G	K	I	X	I	D	A	N	N	A	Y	N	L	N	L	T	K	E	V	L	A	A	L	S	D	V	N	L	Y	W
Template Known Secondary structure											T	T	T										T	T	T	T	T	S																						T	T								T	T														T	T	T	S
Template Predicted Secondary structure
Template SS confidence
		152	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.
		208	.	210	.	.	.	.	.	.			.	.	.	220	.	.	.			.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.
Predicted Secondary structure											.	.								.	.
Query SS confidence											.	.								.	.
Query Sequence		I	E	E	P	V	L	A	E	Q	.	.	A	E	Y	Y	P	K	L	.	.	A	A	Q	T	H	I	P	L	A	A	G	E	R	M	F	S	R	F	D	F	K	R	V	L	E	A	G	G	I	S	I	L	Q	P	D	L	S	H	A	G	G	I	T	E	C	Y	K	I	A	G	M	A	E	A	Y	D	V	T	L	A
Query Conservation											.	.								.	.
Alig confidence											.	.								.	.																		.																					.
Template Conservation																																							.																					.
Template Sequence		L	E	E	A	F	H	E	D	E	A	L	Y	E	D	L	K	E	W	L	G	Q	R	G	Q	N	V	L	I	A	D	G	E	G	L	A	S	P	.	H	L	I	E	W	A	T	R	G	R	V	D	V	L	Q	Y	D	I	I	W	.	P	G	F	T	H	W	X	E	L	G	E	K	L	D	A	H	G	L	R	S	A
Template Known Secondary structure					S	S	S																	T										S	S			T	.	T							T	T	S							B	T	T	T	.	B															T	T
Template Predicted Secondary structure																																							.																					.
Template SS confidence
		232	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.		.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.		.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.
		284	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		P	H	C	P	L	G	P	I	A	L	A	A	C	L	H	I	D	F	V	S	Y	N	A	V	L	Q	E	Q	S	M	G	I	H	Y	N	K	G	A	E	L	L	D	F	V	K	N	K	E	D	F	S	M	V	G	G	F	F	K	P	L	T	K	P	G	L	G	V	E	I	D	E	A	K	V	I	E	F	S	K	N
Query Conservation
Alig confidence																														.	.	.	.	.	.	.	.	.
Template Conservation																														.	.	.	.	.	.	.	.	.
Template Sequence		P	H	C	Y	G	N	A	Y	G	I	Y	A	S	G	H	L	S	A	A	V	R	N	F	E	F	V	E	Y	.	.	.	.	.	.	.	.	.	D	D	I	T	I	E	G	X	D	V	S	G	Y	R	I	E	N	G	E	I	H	V	P	A	T	P	G	F	G	I	V	F	D	D	E	L	V	T	Y	L	I	N	R
Template Known Secondary structure			B			S												T	T	T		T	T	B						.	.	.	.	.	.	.	.	.						T	T				T	T					T	T							S	S	B	T	S
Template Predicted Secondary structure																														.	.	.	.	.	.	.	.	.
Template SS confidence
		310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.										.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380
		364	.	.	.	.	.	370
Predicted Secondary structure
Query SS confidence
Query Sequence		A	P	D	W	R	N	P
Query Conservation
Alig confidence			.
Template Conservation			.
Template Sequence		S	.	G	W	S	E	G
Template Known Secondary structure		T	.	S
Template Predicted Secondary structure			.
Template SS confidence
		381		.	.	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions