Job Description Q6BF17 Confidence 100.00% Date Thu Jan 5 12:37:31 GMT 2012 Rank 70 Aligned Residues 342 % Identity 22% Template c3mznA_ PDB info PDB header:lyase Chain: A: PDB Molecule:glucarate dehydratase; PDBTitle: crystal structure of probable glucarate dehydratase from2 chromohalobacter salexigens dsm 3043 Resolution 1.85 Å

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		2	.	.	.	.	.	.	.	10	.	.	.																	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.
Predicted Secondary structure														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		K	I	T	K	I	T	T	Y	R	L	P	P	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	R	W	M	F	L	K	I	E	T	D	E	G	V	V	G	W	G	E	P	V	I	E	G	R	A	R	T	V	E	A	A	V	H	E	L	G	D	Y	L	I	G	Q	D	P	S	R	I	N	D	L	W	Q
Query Conservation														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																							.	.	.
Template Conservation																																																				.	.	.
Template Sequence		K	I	T	K	M	N	V	V	P	V	A	G	E	D	G	F	L	L	N	L	S	G	G	H	E	P	W	F	I	R	C	V	L	V	L	E	D	E	S	G	N	R	G	V	G	E	I	P	S	S	.	.	.	E	G	I	L	N	G	L	E	K	C	R	S	L	V	E	G	A	R	V	N	E	V	K	Q	V	L	S
Template Known Secondary structure		B																B			T	T					S												T	T	S											.	.	.										T					T	T		B	G	G	G
Template Predicted Secondary structure																																																				.	.	.
Template SS confidence
		4	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.				.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80
		66	.	.	.	70	.	.	.	.	.											.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.			.	.	110	.	.	.	.	.	.	.	.	.	120	.
Predicted Secondary structure												.	.	.	.	.	.	.	.	.	.																																	.	.															.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence												.	.	.	.	.	.	.	.	.	.																																	.	.															.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		V	M	Y	R	A	G	F	Y	R	G	.	.	.	.	.	.	.	.	.	.	G	P	I	L	M	S	A	I	A	G	I	D	Q	A	L	W	D	I	K	G	K	V	L	N	A	P	V	W	Q	L	M	G	.	.	G	L	V	R	D	K	I	K	A	Y	S	W	V	G	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation												.	.	.	.	.	.	.	.	.	.																																	.	.															.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence												.	.	.	.	.	.	.	.	.	.																																	.	.															.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		R	A	R	G	L	L	A	Q	G	G	P	E	E	R	G	R	Q	T	F	D	L	R	V	A	V	H	V	I	T	A	I	E	S	A	L	F	D	L	F	G	Q	A	L	G	M	P	V	A	D	L	L	G	Q	Y	G	R	Q	R	D	E	V	E	A	L	G	Y	L	F	L	L	G	D	P	D	K	T	D	L	P	Y
Template Known Secondary structure								G	G	G							S	S	S	S				S																					T		B	G	G	G	G	S	T	T	T					S				B							B			G	G	G	S	S	S
Template Predicted Secondary structure
Template SS confidence
		81	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160
																			122	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.		.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																		.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																		.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	D	R	P	A	D	V	I	D	G	I	K	T	L	R	E	I	.	G	F	D	T	F	K	L	N	G	C	E	E	L	G	L	I	D	N	S	R	A	V	D	A	A	V	N	T	V	A	Q	I	R	E	A	F	G	N	Q	I	E	F	G	L	D
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																		.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																		.													.	.	.	.	.	.	.	.																	.
Template Conservation																																																	.	.	.	.	.	.	.	.																	.
Template Sequence		P	R	V	A	D	P	V	D	A	W	D	E	V	R	Y	R	E	A	M	T	P	E	A	V	A	N	L	A	R	A	A	Y	D	R	Y	G	F	K	D	F	K	L	K	G	G	V	L	.	.	.	.	.	.	.	.	R	G	E	E	E	A	D	C	I	R	A	L	H	E	A	F	.	P	E	A	R	L	A	L	D
Template Known Secondary structure					S	S			S						T	T	S		B		S																		S							S	S	S	.	.	.	.	.	.	.	.																	.	T	T	S
Template Predicted Secondary structure																																																	.	.	.	.	.	.	.	.																	.
Template SS confidence
		161	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.									.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.		.	.	.	.	.	.	230	.
		184	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.					.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																				.	.	.	.
Query SS confidence																																				.	.	.	.
Query Sequence		F	H	G	R	V	S	A	P	M	A	K	V	L	I	K	E	L	E	P	Y	R	P	L	F	I	E	E	P	V	L	A	E	Q	A	.	.	.	.	E	Y	Y	P	K	L	A	A	Q	T	H	I	P	L	A	A	G	E	R	M	F	S	R	F	D	F	K	R	V	L	E	A	G	G	I	S	I	L	Q	P	D	L
Query Conservation																																				.	.	.	.
Alig confidence																				.																.	.	.	.
Template Conservation																				.
Template Sequence		P	N	G	A	W	K	L	D	E	A	V	R	V	L	E	P	I	K	.	H	L	L	S	Y	A	E	D	P	C	G	Q	E	G	G	F	S	G	R	E	T	M	A	E	F	K	K	R	T	G	L	P	T	A	T	N	M	I	A	T	D	Y	K	Q	L	Q	Y	A	V	Q	L	N	S	V	D	I	P	L	A	D	C
Template Known Secondary structure			T	T		B										G	G	G	G	.	G	G		S				S	S	B			B	T	T	B																				S	S	S	S	S	S											T			S			B
Template Predicted Secondary structure																				.
Template SS confidence
		232	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.		250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310
		260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.		.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.
Predicted Secondary structure																															.
Query SS confidence																															.
Query Sequence		S	H	A	G	G	I	T	E	C	Y	K	I	A	G	M	A	E	A	Y	D	V	T	L	A	P	H	C	P	L	.	G	P	I	A	L	A	A	C	L	H	I	D	F	V	S	Y	N	A	V	L	Q	E	Q	S	M	G	I	H	Y	N	K	G	A	E	L	L	D	F	V	K	N	K	E	D	F	S	M	V	G	G
Query Conservation																															.
Alig confidence		.																													.																											.	.	.	.	.	.
Template Conservation		.																																																								.	.	.	.	.	.
Template Sequence		.	H	F	W	T	M	Q	G	A	V	A	V	G	E	L	C	N	E	W	G	M	T	W	G	S	H	S	N	N	H	F	D	I	S	L	A	M	M	T	H	V	A	A	A	C	P	G	E	I	T	A	I	D	T	H	W	.	.	.	.	.	.	I	W	Q	D	G	Q	R	I	T	R	E	P	F	Q	I	R	D	G
Template Known Secondary structure		.																		T	T				B					S															T			S					B					.	.	.	.	.	.				T	T			S	B	S	S					B	T	T
Template Predicted Secondary structure		.																																																								.	.	.	.	.	.
Template SS confidence
			311	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.							.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.
		339	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		F	F	K	P	L	T	K	P	G	L	G	V	E	I	D	E	A	K	V	I	E	F	S	K	N
Query Conservation
Alig confidence
Template Conservation
Template Sequence		K	L	T	V	P	K	T	P	G	L	G	I	E	L	D	D	D	K	L	M	E	A	H	E	T
Template Known Secondary structure								S	S	B	T	S			B
Template Predicted Secondary structure
Template SS confidence
		384	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions