Job Description Q6BF17 Confidence 100.00% Date Thu Jan 5 12:37:31 GMT 2012 Rank 46 Aligned Residues 352 % Identity 25% Template c3mkcA_ PDB info PDB header:isomerase Chain: A: PDB Molecule:racemase; PDBTitle: crystal structure of a putative racemase Resolution 1.77 Å

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		1	.	.	.	.	.	.	.	.	10	.	.	.				.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.								.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Predicted Secondary structure															.	.	.																																			.	.	.	.	.	.	.
Query SS confidence															.	.	.																																			.	.	.	.	.	.	.
Query Sequence		M	K	I	T	K	I	T	T	Y	R	L	P	P	.	.	.	R	W	M	F	L	K	I	E	T	D	E	G	V	V	G	W	G	E	P	V	I	E	G	R	A	R	T	V	E	A	A	V	H	E	.	.	.	.	.	.	.	L	G	D	Y	L	I	G	Q	D	P	S	R	I	N	D	L	W	Q	V	M	Y	R	A
Query Conservation															.	.	.																																			.	.	.	.	.	.	.
Alig confidence															.	.	.																																			.	.	.	.	.	.	.
Template Conservation
Template Sequence		A	P	I	K	S	I	E	F	I	P	V	N	Y	Q	S	Q	N	T	V	V	V	K	V	T	D	E	N	G	V	Y	G	L	G	E	A	D	G	S	P	D	A	I	L	A	Y	A	N	I	E	T	E	H	K	W	L	T	N	I	T	E	K	A	I	G	R	L	P	I	E	I	N	A	I	W	D	A	X	Y	D	A
Template Known Secondary structure																											T	T	S									S										T					B	T	T	B			T	T	T	T	T	T	T	S		T	T
Template Predicted Secondary structure
Template SS confidence
		10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.
		71	.	.	.	.		.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.									.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.
Predicted Secondary structure							.																																																	.	.	.	.	.	.	.	.
Query SS confidence							.																																																	.	.	.	.	.	.	.	.
Query Sequence		G	F	Y	R	G	.	G	P	I	L	M	S	A	I	A	G	I	D	Q	A	L	W	D	I	K	G	K	V	L	N	A	P	V	W	Q	L	M	G	G	L	V	R	D	K	I	K	A	Y	S	W	V	G	G	D	.	.	.	.	.	.	.	.	R	P	A	D	V	I	D	G	I	K	T	L	R	E	I	G	F	D
Query Conservation							.																																																	.	.	.	.	.	.	.	.
Alig confidence							.																																																	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		T	Q	W	Q	G	X	R	G	L	G	X	F	A	L	S	G	I	D	X	A	L	Y	D	L	A	G	K	Q	L	G	V	P	A	Y	Q	L	L	G	G	T	N	K	D	K	V	H	P	Y	L	T	L	Y	P	A	I	P	D	A	S	L	D	V	A	I	K	G	Y	A	P	L	L	E	K	A	K	A	H	N	I	R
Template Known Secondary structure		T					S	S	T																						T		B					T	T			S		S											S																							T	T		S
Template Predicted Secondary structure
Template SS confidence
		94	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.
		142	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.		190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220
Predicted Secondary structure																																																		.
Query SS confidence																																																		.
Query Sequence		T	F	K	L	N	G	C	E	E	L	G	L	I	D	N	S	R	A	V	D	A	A	V	N	T	V	A	Q	I	R	E	A	F	G	N	Q	I	E	F	G	L	D	F	H	G	R	V	S	.	A	P	M	A	K	V	L	I	K	E	L	E	P	Y	R	P	L	F	I	E	E	P	V	L	A	E	Q	A	E	Y	Y
Query Conservation																																																		.
Alig confidence													.	.	.	.	.																																	.
Template Conservation													.	.	.	.	.
Template Sequence		A	V	K	V	C	V	P	I	K	A	D	.	.	.	.	.	W	S	T	K	E	V	A	Y	Y	L	R	E	L	R	G	I	L	G	H	D	T	D	X	X	V	D	Y	L	Y	R	F	T	D	W	Y	E	V	A	R	L	L	N	S	I	E	D	L	E	L	Y	F	A	E	A	T	L	Q	H	D	D	L	S	G	H
Template Known Secondary structure									T	T			.	.	.	.	.																			S	S	S							T	T															T	G	G	G			S				S		S		T	T
Template Predicted Secondary structure													.	.	.	.	.
Template SS confidence
		175	.	.	.	.	180	.	.	.	.	.						.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.
		221	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300
Predicted Secondary structure
Query SS confidence
Query Sequence		P	K	L	A	A	Q	T	H	I	P	L	A	A	G	E	R	M	F	S	R	F	D	F	K	R	V	L	E	A	G	G	I	S	I	L	Q	P	D	L	S	H	A	G	G	I	T	E	C	Y	K	I	A	G	M	A	E	A	Y	D	V	T	L	A	P	H	C	P	L	G	P	I	A	L	A	A	C	L	H	I	D
Query Conservation
Alig confidence
Template Conservation
Template Sequence		A	K	L	V	E	N	T	R	S	R	I	C	G	A	E	X	S	T	T	R	F	E	A	E	E	W	I	T	K	G	K	V	H	L	L	Q	S	D	Y	N	R	C	G	G	L	T	E	L	R	R	I	T	E	X	A	T	A	N	N	V	Q	V	X	P	H	N	W	K	T	G	I	T	S	A	A	A	I	H	Y	Q
Template Known Secondary structure									S	S		B				T	T													T	T			S						T	T	T	T	T															T	T									S
Template Predicted Secondary structure
Template SS confidence
		250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.
		301	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360
Predicted Secondary structure
Query SS confidence
Query Sequence		F	V	S	Y	N	A	V	L	Q	E	Q	S	M	G	I	H	Y	N	K	G	A	E	L	L	D	F	V	K	N	K	E	D	F	S	M	V	G	G	F	F	K	P	L	T	K	P	G	L	G	V	E	I	D	E	A	K	V	I	E	F
Query Conservation
Alig confidence																			.	.	.
Template Conservation																			.	.	.
Template Sequence		F	A	V	G	N	A	P	Y	F	E	Y	V	H	P	E	F	C	.	.	.	D	G	E	L	R	K	Y	L	V	T	P	E	A	E	L	V	D	G	G	F	A	K	P	T	A	P	G	L	G	I	D	L	N	Q	E	F	L	A	S	L
Template Known Secondary structure				T			S	S							G	G	G		.	.	.								S								B	T	T	B						S	S	B	T											T
Template Predicted Secondary structure																			.	.	.
Template SS confidence
		330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.				.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions