Job Description Q6BF17 Confidence 100.00% Date Thu Jan 5 12:37:31 GMT 2012 Rank 119 Aligned Residues 293 % Identity 18% Template c3gc2A_ PDB info PDB header:lyase Chain: A: PDB Molecule:o-succinylbenzoate synthase; PDBTitle: 1.85 angstrom crystal structure of o-succinylbenzoate synthase from2 salmonella typhimurium in complex with succinic acid Resolution 1.85 Å

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		3	.	.	.	.	.	.	10	.	.	.	.	.																	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.			.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.
Predicted Secondary structure															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																				.	.
Query SS confidence															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																				.	.
Query Sequence		I	T	K	I	T	T	Y	R	L	P	P	R	W	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	M	F	L	K	I	E	T	D	E	G	V	V	G	W	G	E	P	V	I	.	.	E	G	R	A	R	T	V	E	A	A	V	H	E	L	G	D	Y	L	I	G	Q	D	P	S	R	I	N	D	L	W
Query Conservation															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																				.	.
Alig confidence															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.						.														.	.																					.	.	.	.	.	.	.	.	.	.
Template Conservation																																				.																																				.	.	.	.	.	.	.	.	.	.
Template Sequence		X	R	S	A	Q	V	Y	R	W	Q	I	P	X	D	A	G	V	V	L	R	D	R	R	L	K	T	R	D	G	L	Y	V	C	L	.	R	D	G	E	R	E	G	W	G	E	I	S	P	L	P	G	F	S	Q	E	T	W	E	E	A	Q	T	A	L	L	T	W	V	N	D	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure		T												B		T	T		B	S	S	S		B												.			T	T											T	T	T		S	S																.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																				.																																				.	.	.	.	.	.	.	.	.	.
Template SS confidence
		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.		.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.
		65	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	V	M	Y	R	A	G	F	Y	R	G	G	P	I	L	M	S	A	I	A	G	I	D	Q	A	L	W	D	I	K	G	K	V	L	N	A	P	V	W	Q	L	M	G	G	L	V	R	D	K	I	K	A	Y	S	W	V	G	G	D	R	P	A	D	V	I	D	G	I	K	T	L	R	E	I	G	F	D	T	F	K
Query Conservation
Alig confidence		.	.	.	.																																								.	.	.	.	.	.	.	.	.	.	.	.																.	.
Template Conservation		.	.	.	.																																								.	.	.	.	.	.	.	.	.	.	.	.																.	.
Template Sequence		.	.	.	.	W	L	Q	G	S	E	G	L	P	E	X	P	S	V	A	F	G	A	S	C	A	L	A	E	L	T	G	V	L	P	E	A	A	D	Y	R	A	A	P	.	.	.	.	.	.	.	.	.	.	.	.	L	C	T	G	D	P	D	D	L	V	L	R	L	A	D	.	.	X	P	G	E	K	I	A	K
Template Known Secondary structure		.	.	.	.			T	T						S																	T		S		S									.	.	.	.	.	.	.	.	.	.	.	.	B			S											T	.	.		S	S
Template Predicted Secondary structure		.	.	.	.																																								.	.	.	.	.	.	.	.	.	.	.	.																.	.
Template SS confidence
						70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.													.	110	.	.	.	.	.	.	.	.	.	120	.	.	.			.	.	.	.	.	.	130	.
		145	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.				.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.
Predicted Secondary structure																																																											.	.	.
Query SS confidence																																																											.	.	.
Query Sequence		L	N	G	C	E	E	L	G	L	I	D	N	S	R	A	V	D	A	A	V	N	T	V	A	Q	I	R	E	A	F	G	N	Q	I	E	F	G	L	D	F	H	G	R	V	S	A	P	M	A	K	V	L	I	K	E	L	E	.	.	.	P	Y	R	P	L	F	I	E	E	P	V	L	A	E	Q	A	E	Y	Y	P
Query Conservation																																																											.	.	.
Alig confidence								.	.	.	.	.	.	.	.																.																												.	.	.													.	.
Template Conservation								.	.	.	.	.	.	.	.																.																																											.	.
Template Sequence		V	K	V	G	L	Y	.	.	.	.	.	.	.	.	E	A	V	R	D	G	X	V	V	N	L	L	L	E	A	.	I	P	D	L	H	L	R	L	D	A	N	R	A	W	T	P	L	K	A	Q	Q	F	A	K	Y	V	N	P	D	Y	R	A	R	I	A	F	L	E	E	P	C	K	.	.	T	R	D	D	S	R
Template Known Secondary structure					S	S	S	.	.	.	.	.	.	.	.																.		T	T								T	T		B											T	S						T	T								B	S	.	.	S
Template Predicted Secondary structure								.	.	.	.	.	.	.	.																.																																											.	.
Template SS confidence
		132	.	.	.	.	.									.	.	140	.	.	.	.	.	.	.	.	.	150	.	.		.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.			.	.	.	.	.	200
		222	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.		.	290	.	.	.	.	.	.	.	.	.	300
Predicted Secondary structure																																																																					.
Query SS confidence																																																																					.
Query Sequence		K	L	A	A	Q	T	H	I	P	L	A	A	G	E	R	M	F	S	R	F	D	F	K	R	V	L	E	A	G	G	I	S	I	L	Q	P	D	L	S	H	A	G	G	I	T	E	C	Y	K	I	A	G	M	A	E	A	Y	D	V	T	L	A	P	H	C	P	L	.	G	P	I	A	L	A	A	C	L	H	I	D
Query Conservation																																																																					.
Alig confidence																											.	.																																									.
Template Conservation																											.	.
Template Sequence		A	F	A	R	E	T	G	I	A	I	A	W	D	E	S	L	R	E	A	D	F	T	F	E	A	.	.	E	E	G	V	R	A	V	V	I	K	P	T	L	T	G	S	L	D	K	V	R	E	Q	V	A	A	A	H	A	L	G	L	T	A	V	I	S	S	S	I	E	S	S	L	G	L	T	Q	L	A	R	I	A
Template Known Secondary structure														S	G	G	G	G	S	T	T						.	.		T	T																											T	T						B		S	S
Template Predicted Secondary structure																											.	.
Template SS confidence
		201	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.			.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.
		301	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		F	V	S	Y	N	A	V	L	Q	E	Q	S	M	G	I	H	Y	N	K	G	A	E	L	L	D	F	V	K	N	K	E	D	F	S	M	V	G	G	F	F	K	P	L	T
Query Conservation
Alig confidence													.	.	.	.	.	.	.
Template Conservation													.	.	.	.	.	.	.
Template Sequence		A	W	L	T	P	G	T	L	P	G	L	.	.	.	.	.	.	.	D	T	L	H	L	X	Q	A	Q	Q	I	R	P	W	P	G	S	A	L	P	C	L	K	R	E	E
Template Known Secondary structure						T	T	S			B		.	.	.	.	.	.	.	T	T	G	G	G	B	S				S	S			T	T			S					G	G	G
Template Predicted Secondary structure													.	.	.	.	.	.	.
Template SS confidence
		279	280	.	.	.	.	.	.	.	.	.								290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions