Job Description Q6BF17 Confidence 100.00% Date Thu Jan 5 12:37:31 GMT 2012 Rank 47 Aligned Residues 340 % Identity 23% Template c3eezA_ PDB info PDB header:isomerase Chain: A: PDB Molecule:putative mandelate racemase/muconate lactonizing PDBTitle: crystal structure of a putative mandelate racemase/muconate2 lactonizing enzyme from silicibacter pomeroyi Resolution 2.80 Å

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		1	.	.	.	.	.	.	.	.	10	.	.	.													.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.							.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.
Predicted Secondary structure															.	.	.	.	.	.	.	.	.	.	.	.																									.	.	.	.	.	.
Query SS confidence															.	.	.	.	.	.	.	.	.	.	.	.																									.	.	.	.	.	.
Query Sequence		M	K	I	T	K	I	T	T	Y	R	L	P	P	.	.	.	.	.	.	.	.	.	.	.	.	R	W	M	F	L	K	I	E	T	D	E	G	V	V	G	W	G	E	P	V	I	E	G	R	.	.	.	.	.	.	A	R	T	V	E	A	A	V	H	E	L	G	D	Y	L	I	G	Q	D	P	S	R	I	N	D
Query Conservation															.	.	.	.	.	.	.	.	.	.	.	.																									.	.	.	.	.	.
Alig confidence															.	.	.	.	.	.	.	.	.	.	.	.																									.	.	.	.	.	.
Template Conservation
Template Sequence		L	K	I	T	R	I	T	V	Y	Q	V	D	L	P	L	E	H	P	Y	W	K	F	E	L	L	D	A	T	L	V	K	L	E	T	D	A	G	I	T	G	W	G	E	G	T	P	W	G	H	T	Y	V	P	A	H	G	P	G	I	R	A	G	I	E	T	M	A	P	F	V	L	G	L	D	P	R	R	L	L	D
Template Known Secondary structure																B	S	S																		T	T											S		S	S	S	S	S																		T	T	S		T	T
Template Predicted Secondary structure
Template SS confidence
		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80
		63	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	W	Q	V	M	Y	R	A	G	F	Y	R	G	G	P	I	L	M	S	A	I	A	G	I	D	Q	A	L	W	D	I	K	G	K	V	L	N	A	P	V	W	Q	L	M	G	G	L	V	R	D	K	I	K	A	Y	S	W	V	G	G	D	R	P	A	D	V	I	D	G	I	K	T	L	R	E	I	G	F	D	T
Query Conservation
Alig confidence														.	.	.	.	.
Template Conservation														.	.	.	.	.
Template Sequence		V	E	R	A	M	D	I	A	L	P	G	H	.	.	.	.	.	L	Y	A	K	S	P	I	D	M	A	C	W	D	I	A	G	Q	A	A	G	L	P	I	A	D	L	M	G	G	G	S	R	T	P	R	P	I	A	S	S	V	G	A	K	S	V	E	E	T	R	A	V	I	D	R	Y	R	Q	R	G	Y	V	A
Template Known Secondary structure										S	S	S		.	.	.	.	.																			T	T	S	B					T	T					S				B	B			B		S																T	T
Template Predicted Secondary structure														.	.	.	.	.
Template SS confidence
		87	.	.	90	.	.	.	.	.	.	.	.						.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.
		143	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		F	K	L	N	G	C	E	E	L	G	L	I	D	N	S	R	A	V	D	A	A	V	N	T	V	A	Q	I	R	E	A	F	G	N	Q	I	E	F	G	L	D	F	H	G	R	V	S	A	P	M	A	K	V	L	I	K	E	L	E	P	Y	R	P	L	F	I	E	E	P	V	L	A	E	Q	A	E	Y	Y	P	K
Query Conservation
Alig confidence									.	.	.	.	.	.	.	.	.																																																.								.	.
Template Conservation									.	.	.	.	.	.	.	.	.																																																.								.	.
Template Sequence		H	S	V	K	I	G	G	.	.	.	.	.	.	.	.	.	D	V	E	R	D	I	A	R	I	R	D	V	E	D	I	R	E	P	G	E	I	V	L	Y	D	V	N	R	G	W	T	R	Q	Q	A	L	R	V	M	R	A	T	E	D	L	H	V	.	M	F	E	Q	P	G	E	.	.	T	L	D	D	I	A	A
Template Known Secondary structure								S	.	.	.	.	.	.	.	.	.													T	T	S			T	T								T	T														T	G	G	G	T		.						S	S	.	.	S
Template Predicted Secondary structure									.	.	.	.	.	.	.	.	.																																																.								.	.
Template SS confidence
		162	.	.	.	.	.	.										.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.		.	.	.	.	220	.	.			.	.	.	.	.	.	.
		223	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.		.	290	.	.	.	.	.	.	.	.	.	300	.
Predicted Secondary structure																																																																				.
Query SS confidence																																																																				.
Query Sequence		L	A	A	Q	T	H	I	P	L	A	A	G	E	R	M	F	S	R	F	D	F	K	R	V	L	E	A	G	G	I	S	I	L	Q	P	D	L	S	H	A	G	G	I	T	E	C	Y	K	I	A	G	M	A	E	A	Y	D	V	T	L	A	P	H	C	P	L	.	G	P	I	A	L	A	A	C	L	H	I	D	F
Query Conservation																																																																				.
Alig confidence																																																																				.
Template Conservation
Template Sequence		I	R	P	L	H	S	A	P	V	S	V	D	E	C	L	V	T	L	Q	D	A	A	R	V	A	R	D	G	L	A	E	V	F	G	I	K	L	N	R	V	G	G	L	T	R	A	A	R	M	R	D	I	A	L	T	H	G	I	D	M	F	V	M	A	T	G	G	S	V	L	A	D	A	E	A	L	H	L	A	A
Template Known Secondary structure		T	G	G	G									T	T			S										T	T			S										T	S														T	T								S	S		S
Template Predicted Secondary structure
Template SS confidence
		230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.
		302	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	S	Y	N	A	V	L	Q	E	Q	S	M	G	I	H	Y	N	K	G	A	E	L	L	D	F	V	K	N	K	E	D	F	S	M	V	G	G	F	F	K	P	L	T	K	P	G	L	G	V	E	I	D	E	A	K	V	I	E	F	S	K
Query Conservation
Alig confidence																.	.	.	.	.
Template Conservation																.	.	.	.	.
Template Sequence		T	I	P	D	H	A	C	H	A	V	W	A	C	Q	.	.	.	.	.	D	M	L	T	V	D	I	A	G	G	R	G	P	R	N	I	D	G	H	L	H	L	P	E	T	P	G	L	G	V	H	P	D	E	D	A	L	G	D	P	V	A
Template Known Secondary structure		T	S		G	G	G	B			B			S	G	.	.	.	.	.	G	G	B	S			T	T	T	T		S	S			B	T	T							S	S	B	T	S					T	T	S	S		S		S
Template Predicted Secondary structure																.	.	.	.	.
Template SS confidence
		310	.	.	.	.	.	.	.	.	.	320	.	.	.						.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions