Job Description Q6BF17 Confidence 100.00% Date Thu Jan 5 12:37:31 GMT 2012 Rank 66 Aligned Residues 345 % Identity 24% Template c3ddmD_ PDB info PDB header:lyase Chain: D: PDB Molecule:putative mandelate racemase/muconate lactonizing PDBTitle: crystal structure of mandelate racemase/muconate2 lactonizing enzyme from bordetella bronchiseptica rb50 Resolution 2.60 Å

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		1	.	.	.	.	.	.	.	.	10	.	.	.						.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.					.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.
Predicted Secondary structure															.	.	.	.	.																										.	.	.	.																																.	.
Query SS confidence															.	.	.	.	.																										.	.	.	.																																.	.
Query Sequence		M	K	I	T	K	I	T	T	Y	R	L	P	P	.	.	.	.	.	R	W	M	F	L	K	I	E	T	D	E	G	V	V	G	W	G	E	P	V	I	E	G	R	A	.	.	.	.	R	T	V	E	A	A	V	H	E	L	G	D	Y	L	I	G	Q	D	P	S	R	I	N	D	L	W	Q	V	M	Y	R	.	.
Query Conservation															.	.	.	.	.																										.	.	.	.																																.	.
Alig confidence															.	.	.	.	.																										.	.	.	.																																.	.
Template Conservation
Template Sequence		I	T	P	A	R	V	R	A	H	V	F	R	Y	P	V	H	D	R	P	A	V	L	V	E	V	E	D	S	D	G	A	V	G	W	G	E	V	W	C	N	F	P	A	C	G	A	E	H	R	A	R	L	V	E	T	V	L	A	P	L	L	T	A	R	A	F	A	D	P	A	Q	A	F	A	H	L	E	A	R	T
Template Known Secondary structure		B																											T	T	S											S	S	T	T												T						T	T	S		B	S	S											T	T
Template Predicted Secondary structure
Template SS confidence
		10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.
					70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.
Predicted Secondary structure		.	.	.
Query SS confidence		.	.	.
Query Sequence		.	.	.	A	G	F	Y	R	G	G	P	I	L	M	S	A	I	A	G	I	D	Q	A	L	W	D	I	K	G	K	V	L	N	A	P	V	W	Q	L	M	G	G	L	V	R	D	K	I	K	A	Y	S	W	V	G	G	D	R	P	A	D	V	I	D	G	I	K	T	L	R	E	I	G	F	D	T	F	K	L	N
Query Conservation		.	.	.
Alig confidence		.	.	.																																									.												.	.
Template Conservation																																													.												.	.
Template Sequence		A	V	L	A	I	Q	T	G	E	P	G	P	L	A	Q	A	I	A	G	L	D	I	A	L	C	D	L	A	A	R	R	A	G	Q	P	L	W	A	W	L	G	G	S	.	G	D	R	I	G	V	Y	A	S	G	I	.	.	N	P	E	N	P	E	D	V	V	A	R	K	A	A	E	G	Y	R	A	F	K	L	K
Template Known Secondary structure									T																									T		B					T	T		S	.												.	.		S	S													T
Template Predicted Secondary structure																																													.												.	.
Template SS confidence
		101	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.		.	.	.	.	.	.	150	.	.	.	.			.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.
		147	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.		220	.	.	.	.	.
Predicted Secondary structure																																																																											.
Query SS confidence																																																																											.
Query Sequence		G	C	E	E	L	G	L	I	D	N	S	R	A	V	D	A	A	V	N	T	V	A	Q	I	R	E	A	F	G	N	Q	I	E	F	G	L	D	F	H	G	R	V	S	A	P	M	A	K	V	L	I	K	E	L	E	P	Y	R	P	L	F	I	E	E	P	V	L	A	E	Q	A	E	Y	.	Y	P	K	L	A	A
Query Conservation																																																																											.
Alig confidence					.	.	.	.	.	.	.	.	.																																																														.
Template Conservation					.	.	.	.	.	.	.	.	.
Template Sequence		V	G	F	.	.	.	.	.	.	.	.	.	D	D	A	R	D	V	R	N	A	L	H	V	R	E	L	L	G	A	A	T	P	L	M	A	D	A	N	Q	G	W	D	L	P	R	A	R	Q	M	A	Q	R	L	G	P	A	Q	L	D	W	L	E	E	P	L	R	A	D	R	P	A	A	E	W	A	E	L	A	Q
Template Known Secondary structure			S	S	.	.	.	.	.	.	.	.	.																		S	S	S							T	T															G	G	G									S		T	T	S
Template Predicted Secondary structure					.	.	.	.	.	.	.	.	.
Template SS confidence
		178	.	180										.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.
		226	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	T	H	I	P	L	A	A	G	E	R	M	F	S	R	F	D	F	K	R	V	L	E	A	G	G	I	S	I	L	Q	P	D	L	S	H	A	G	G	I	T	E	C	Y	K	I	A	G	M	A	E	A	Y	D	V	T	L	A	P	H	C	P	L	G	P	I	A	L	A	A	C	L	H	I	D	F	V	S	Y	N
Query Conservation
Alig confidence
Template Conservation
Template Sequence		A	A	P	M	P	L	A	G	G	E	N	I	A	G	V	A	A	F	E	T	A	L	A	A	R	S	L	R	V	M	Q	P	D	L	A	K	W	G	G	F	S	G	C	L	P	V	A	R	A	V	V	A	A	G	L	R	Y	C	P	H	Y	L	G	A	G	I	G	L	Q	A	S	A	H	L	L	A	A	V	P	G
Template Known Secondary structure				S	S						T	T			S											T									T	T	T	T	T															T	T									S															S
Template Predicted Secondary structure
Template SS confidence
		249	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.
		306	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360
Predicted Secondary structure
Query SS confidence
Query Sequence		A	V	L	Q	E	Q	S	M	G	I	H	Y	N	K	G	A	E	L	L	D	F	V	K	N	K	E	D	F	S	M	V	G	G	F	F	K	P	L	T	K	P	G	L	G	V	E	I	D	E	A	K	V	I	E	F
Query Conservation
Alig confidence									.	.	.
Template Conservation									.	.	.
Template Sequence		L	A	S	P	G	L	L	.	.	.	G	V	D	A	N	D	N	P	L	R	S	L	L	S	P	A	L	A	T	L	H	E	G	R	I	T	L	G	G	A	P	G	L	G	V	T	P	D	L	A	A	L	R	A	A
Template Known Secondary structure		S	S	S					.	.	.					S							T	S		G	G	G	G	G			S	S						S		S	B	T	S										T	T
Template Predicted Secondary structure									.	.	.
Template SS confidence
		329	330	.	.	.	.	.				.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions