Job Description Q6BF17 Confidence 100.00% Date Thu Jan 5 12:37:31 GMT 2012 Rank 68 Aligned Residues 338 % Identity 21% Template c2zc8B_ PDB info PDB header:metal binding protein Chain: B: PDB Molecule:n-acylamino acid racemase; PDBTitle: crystal structure of n-acylamino acid racemase from thermus2 thermophilus hb8 Resolution 1.95 Å

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		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.																	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.									.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.
Predicted Secondary structure																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																							.	.	.	.	.	.	.	.
Query SS confidence																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																							.	.	.	.	.	.	.	.
Query Sequence		M	K	I	T	K	I	T	T	Y	R	L	P	P	R	W	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	M	F	L	K	I	E	T	D	E	G	V	V	G	W	G	E	P	V	I	E	G	R	.	.	.	.	.	.	.	.	A	R	T	V	E	A	A	V	H	E	L	G	D	Y	L	I	G	Q	D
Query Conservation																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																							.	.	.	.	.	.	.	.
Alig confidence																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.						.																	.	.	.	.	.	.	.	.
Template Conservation																																						.
Template Sequence		M	R	I	E	A	A	E	L	R	I	L	E	L	P	L	K	F	R	F	E	T	S	F	G	V	Q	T	K	R	T	I	L	L	L	R	L	.	F	G	E	G	L	E	G	L	G	E	G	V	M	E	R	L	P	L	Y	R	E	E	T	V	A	G	A	R	Y	L	L	E	E	V	F	L	P	R	V	L	G	R	D
Template Known Secondary structure			B																				T	T														.			T	T										B	S	S		S	S	S	S		B											T						T	T		B
Template Predicted Secondary structure																																						.
Template SS confidence
		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.		.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.
		57	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		P	S	R	I	N	D	L	W	Q	V	M	Y	R	A	G	F	Y	R	G	G	P	I	L	M	S	A	I	A	G	I	D	Q	A	L	W	D	I	K	G	K	V	L	N	A	P	V	W	Q	L	M	G	G	L	V	R	D	K	I	K	A	Y	S	W	V	G	G	D	R	P	A	D	V	I	D	G	I	K	T	L	R
Query Conservation
Alig confidence																			.	.	.	.	.	.
Template Conservation																			.	.	.	.	.	.
Template Sequence		L	P	N	P	E	A	L	R	E	A	L	A	P	F	R	G	N	.	.	.	.	.	.	P	M	A	K	A	V	L	E	M	A	F	F	D	L	W	A	K	A	L	G	R	P	L	W	Q	V	L	G	G	V	R	Q	A	V	E	V	G	V	S	L	G	I	Q	P	S	V	E	D	T	L	R	V	V	E	R	H	L
Template Known Secondary structure				S									T	T	S		S		.	.	.	.	.	.																				T	S	B						T				S				B								S	S
Template Predicted Secondary structure																			.	.	.	.	.	.
Template SS confidence
		80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.							.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.
		137	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	I	G	F	D	T	F	K	L	N	G	C	E	E	L	G	L	I	D	N	S	R	A	V	D	A	A	V	N	T	V	A	Q	I	R	E	A	F	G	N	Q	I	E	F	G	L	D	F	H	G	R	V	S	A	P	M	A	K	V	L	I	K	E	L	E	P	Y	R	P	L	F	I	E	E	P	V	L	A	E	Q
Query Conservation
Alig confidence																.	.	.	.	.	.	.	.	.	.	.															.																					.
Template Conservation																.	.	.	.	.	.	.	.	.	.	.															.																					.
Template Sequence		E	E	G	Y	R	R	I	K	L	K	I	K	P	G	.	.	.	.	.	.	.	.	.	.	.	W	D	Y	E	V	L	K	A	V	R	E	A	F	P	.	E	A	T	L	T	A	D	A	N	S	A	Y	S	L	A	N	L	A	Q	L	.	K	R	L	D	E	L	R	L	D	Y	I	E	Q	P	L	A	Y	D	D
Template Known Secondary structure			T	T		S							B	T	T	.	.	.	.	.	.	.	.	.	.	.	B	S												T	.	T	S							T	T				G	G	G					.			G	G	G	G	T		S						S		T	T
Template Predicted Secondary structure																.	.	.	.	.	.	.	.	.	.	.															.																					.
Template SS confidence
		154	.	.	.	.	.	160	.	.	.	.	.	.	.												.	.	170	.	.	.	.	.	.	.	.	.	180	.		.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.		.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220
		217	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.		.	290	.	.	.	.	.
Predicted Secondary structure																																																																										.
Query SS confidence																																																																										.
Query Sequence		A	E	Y	Y	P	K	L	A	A	Q	T	H	I	P	L	A	A	G	E	R	M	F	S	R	F	D	F	K	R	V	L	E	A	G	G	I	S	I	L	Q	P	D	L	S	H	A	G	G	I	T	E	C	Y	K	I	A	G	M	A	E	A	Y	D	V	T	L	A	P	H	C	P	L	.	G	P	I	A	L	A	A
Query Conservation																																																																										.
Alig confidence																																																																										.
Template Conservation
Template Sequence		L	L	D	H	A	K	L	Q	R	E	L	S	T	P	I	C	L	D	E	S	L	T	G	A	E	K	A	R	K	A	I	E	L	G	A	G	R	V	F	N	V	K	P	A	R	L	G	G	H	G	E	S	L	R	V	H	A	L	A	E	S	A	G	I	P	L	W	M	G	G	M	L	E	A	G	V	G	R	A	H
Template Known Secondary structure		S											S	S					S	T	T			S											T			S										T	S														T	T
Template Predicted Secondary structure
Template SS confidence
		221	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300
		296	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		C	L	H	I	D	F	V	S	Y	N	A	V	L	Q	E	Q	S	M	G	I	H	Y	N	K	G	A	E	L	L	D	F	V	K	N	K	E	D	F	S	M	V	G	G	F	F	K	P	L	T	K	P	G	L	G	V	E	I	D	E	A	K	V	I	E	F	S	K	N	A
Query Conservation
Alig confidence																					.	.	.	.	.	.
Template Conservation																					.	.	.	.	.	.
Template Sequence		N	L	H	L	A	T	L	P	G	F	T	K	P	G	D	V	S	S	A	.	.	.	.	.	.	S	R	Y	W	E	E	D	I	V	E	E	A	L	E	A	K	D	G	L	M	P	V	P	E	G	V	G	I	G	V	H	L	K	L	P	F	V	E	R	V	T	L	W	Q
Template Known Secondary structure						T	T	S	T	T	B		S		B	S				G	.	.	.	.	.	.	G	G	T		S	S		S	B	S	S					B	T	T							S	S	B	T				B								T
Template Predicted Secondary structure																					.	.	.	.	.	.
Template SS confidence
		301	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.							320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions