Job Description Q6BF17 Confidence 100.00% Date Thu Jan 5 12:37:31 GMT 2012 Rank 34 Aligned Residues 340 % Identity 21% Template c2rdxG_ PDB info PDB header:structural genomics, unknown function Chain: G: PDB Molecule:mandelate racemase/muconate lactonizing enzyme, putative; PDBTitle: crystal structure of mandelate racemase/muconate lactonizing enzyme2 from roseovarius nubinhibens ism Resolution 2.00 Å

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		1	.	.	.	.	.	.	.	.	10	.	.	.									.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.							.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.
Predicted Secondary structure															.	.	.	.	.	.	.	.																									.	.	.	.	.	.
Query SS confidence															.	.	.	.	.	.	.	.																									.	.	.	.	.	.
Query Sequence		M	K	I	T	K	I	T	T	Y	R	L	P	P	.	.	.	.	.	.	.	.	R	W	M	F	L	K	I	E	T	D	E	G	V	V	G	W	G	E	P	V	I	E	G	R	.	.	.	.	.	.	A	R	T	V	E	A	A	V	H	E	L	G	D	Y	L	I	G	Q	D	P	S	R	I	N	D	L	W	Q	V
Query Conservation															.	.	.	.	.	.	.	.																									.	.	.	.	.	.
Alig confidence															.	.	.	.	.	.	.	.																									.	.	.	.	.	.
Template Conservation
Template Sequence		L	R	I	T	R	I	R	L	Y	K	T	D	L	P	Y	V	D	G	T	V	A	R	A	S	V	V	V	I	D	T	D	A	G	L	Q	G	C	G	E	F	T	P	C	G	E	N	Y	M	I	A	H	S	E	G	V	D	A	F	A	R	L	A	A	P	Q	L	L	G	Q	D	P	R	Q	V	A	R	M	E	R	L
Template Known Secondary structure																B	T	T														T	T									B		S	S	T	T	S	S	S			T	T														T	T	S		T	T
Template Predicted Secondary structure
Template SS confidence
		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80
		67	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		M	Y	R	A	G	F	Y	R	G	G	P	I	L	M	S	A	I	A	G	I	D	Q	A	L	W	D	I	K	G	K	V	L	N	A	P	V	W	Q	L	M	G	G	L	V	R	D	K	I	K	A	Y	S	W	V	G	G	D	R	P	A	D	V	I	D	G	I	K	T	L	R	E	I	G	F	D	T	F	K	L	N
Query Conservation
Alig confidence										.	.	.	.	.
Template Conservation										.	.	.	.	.
Template Sequence		M	D	H	L	V	Q	G	H	.	.	.	.	.	G	Y	A	K	A	P	F	D	A	A	F	W	D	I	L	G	Q	A	T	G	Q	P	V	W	M	L	L	G	G	K	L	C	D	G	A	P	M	Y	R	V	A	P	Q	R	S	E	A	E	T	R	A	E	L	A	R	H	R	A	A	G	Y	R	Q	F	Q	I	K
Template Known Secondary structure						S	S	S		.	.	.	.	.																				T		B					T	T			S		S	S			B							S															T	T
Template Predicted Secondary structure										.	.	.	.	.
Template SS confidence
		91	.	.	.	.	.	.	.						.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.
		147	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	C	E	E	L	G	L	I	D	N	S	R	A	V	D	A	A	V	N	T	V	A	Q	I	R	E	A	F	G	N	Q	I	E	F	G	L	D	F	H	G	R	V	S	A	P	M	A	K	V	L	I	K	E	L	E	P	Y	R	P	L	F	I	E	E	P	V	L	A	E	Q	A	E	Y	Y	P	K	L	A	A	Q
Query Conservation
Alig confidence					.	.	.	.	.	.	.	.	.																																																.								.	.
Template Conservation					.	.	.	.	.	.	.	.	.																																																.								.	.
Template Sequence		V	G	A	.	.	.	.	.	.	.	.	.	D	W	Q	S	D	I	D	R	I	R	A	C	L	P	L	L	E	P	G	E	K	A	M	A	D	A	N	Q	G	W	R	V	D	N	A	I	R	L	A	R	A	T	R	D	L	D	Y	.	I	L	E	Q	P	C	R	.	.	S	Y	E	E	C	Q	Q	V	R	R	V
Template Known Secondary structure				S	.	.	.	.	.	.	.	.	.													G	G	G	S		T	T								S	S		S												T	T	T				.						S	S	.	.	S									T	T
Template Predicted Secondary structure					.	.	.	.	.	.	.	.	.																																																.								.	.
Template SS confidence
		166	.	.										.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.		.	.	.	.	220	.	.			.	.	.	.	.	.	.	230	.	.	.
		227	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.		.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.
Predicted Secondary structure																																																																.
Query SS confidence																																																																.
Query Sequence		T	H	I	P	L	A	A	G	E	R	M	F	S	R	F	D	F	K	R	V	L	E	A	G	G	I	S	I	L	Q	P	D	L	S	H	A	G	G	I	T	E	C	Y	K	I	A	G	M	A	E	A	Y	D	V	T	L	A	P	H	C	P	L	.	G	P	I	A	L	A	A	C	L	H	I	D	F	V	S	Y	N
Query Conservation																																																																.
Alig confidence																																																																.
Template Conservation
Template Sequence		A	D	Q	P	M	K	L	D	E	C	V	T	G	L	H	M	A	Q	R	I	V	A	D	R	G	A	E	I	C	C	L	K	I	S	N	L	G	G	L	S	K	A	R	R	T	R	D	F	L	I	D	N	R	M	P	V	V	A	E	D	S	W	G	G	E	I	A	S	A	A	V	A	H	F	A	A	S	T	P	E
Template Known Secondary structure				S						T	T			S											T			S						T	T	T	T	T	S														T	T								S	B		S													T	S		G
Template Predicted Secondary structure
Template SS confidence
		234	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.
		306	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	V	L	Q	E	Q	S	M	G	I	H	Y	N	K	G	A	E	L	L	D	F	V	K	N	K	E	D	F	S	M	V	G	G	F	F	K	P	L	T	K	P	G	L	G	V	E	I	D	E	A	K	V	I	E	F	S	K	N
Query Conservation
Alig confidence											.	.	.	.	.	.
Template Conservation											.	.	.	.	.	.
Template Sequence		E	F	L	I	N	S	T	D	L	.	.	.	.	.	.	M	N	Y	N	T	R	S	T	G	L	G	G	P	T	V	H	Q	G	R	L	Y	A	S	D	T	P	G	L	G	V	T	P	D	F	N	S	L	G	A	P	V	A	D
Template Known Secondary structure		G	G	B			B			G	.	.	.	.	.	.	G	G	G	B	S	S		S									T	T							S	S	B	T	S										S		S
Template Predicted Secondary structure											.	.	.	.	.	.
Template SS confidence
		314	.	.	.	.	.	320	.	.							.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions