Phyre 2 alignment of Q6BF17 with c2pmqA

Job Description Q6BF17
Confidence 100.00% Date Thu Jan 5 12:37:31 GMT 2012

Rank 72 Aligned Residues 337

% Identity 20% Template c2pmqA_

PDB info PDB header:isomerase Chain: A: PDB Molecule:mandelate racemase/muconate lactonizing enzyme; PDBTitle: crystal structure of a mandelate racemase/muconate lactonizing enzyme2 from roseovarius sp. htcc2601

Resolution 1.72 Å

	Insertion relative to template
	Deletion relative to template
	Catalytic residue from the CSA

Detailed help on interpreting your alignment

	2	.	.	.	.	.	.	.	10	.	.	.	.	.																		.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.							.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.
Predicted Secondary structure															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																					.	.	.	.	.	.
Query SS confidence															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																					.	.	.	.	.	.
Query Sequence	K	I	T	K	I	T	T	Y	R	L	P	P	R	W	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	M	F	L	K	I	E	T	D	E	G	V	V	G	W	G	E	P	V	I	E	.	.	.	.	.	.	G	R	A	R	T	V	E	A	A	V	H	E	L	G	D	Y	L	I	G	Q	D	P	S
Query Conservation															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																					.	.	.	.	.	.
Alig confidence															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																					.	.	.	.	.	.
Template Conservation
Template Sequence	K	I	A	E	I	Q	L	F	Q	H	D	L	P	V	V	N	G	P	Y	R	I	A	S	G	D	V	W	S	L	T	T	T	I	V	K	I	I	A	E	D	G	T	I	G	W	G	E	T	C	P	V	G	P	T	Y	A	E	A	H	A	G	G	A	L	A	A	L	E	V	L	A	S	G	L	A	G	A	E	A	L
Template Known Secondary structure															T	T			B			T	T			B	S												T	T	S										S	S	S	S	S	S	S																T	T	T	T			S	S
Template Predicted Secondary structure
Template SS confidence
	2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.

	59	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	R	I	N	D	L	W	Q	V	M	Y	R	A	G	F	Y	R	G	G	P	I	L	M	S	A	I	A	G	I	D	Q	A	L	W	D	I	K	G	K	V	L	N	A	P	V	W	Q	L	M	G	G	L	V	R	D	K	I	K	A	Y	S	W	V	G	G	D	R	P	A	D	V	I	D	G	I	K	T	L	R	E	I
Query Conservation
Alig confidence																.	.	.	.	.	.
Template Conservation																.	.	.	.	.	.
Template Sequence	P	L	P	L	H	T	R	X	D	S	L	L	C	G	H	.	.	.	.	.	.	N	Y	A	K	S	A	L	D	I	A	V	H	D	L	W	G	K	R	L	G	V	P	V	H	E	L	L	G	G	A	L	T	D	S	V	S	S	Y	Y	S	L	G	V	X	E	P	D	E	A	A	R	Q	A	L	E	K	Q	R	E
Template Known Secondary structure													S			.	.	.	.	.	.																				T		B					T	T			S		S										S
Template Predicted Secondary structure																.	.	.	.	.	.
Template SS confidence
	82	.	.	.	.	.	.	.	90	.	.	.	.	.	.							.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.

	139	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.		.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.
Predicted Secondary structure																																					.
Query SS confidence																																					.
Query Sequence	G	F	D	T	F	K	L	N	G	C	E	E	L	G	L	I	D	N	S	R	A	V	D	A	A	V	N	T	V	A	Q	I	R	E	A	F	.	G	N	Q	I	E	F	G	L	D	F	H	G	R	V	S	A	P	M	A	K	V	L	I	K	E	L	E	P	Y	R	P	L	F	I	E	E	P	V	L	A	E	Q	A
Query Conservation																																					.
Alig confidence													.	.	.	.	.	.	.	.																	.																																.								.	.
Template Conservation													.	.	.	.	.	.	.	.																																																	.								.	.
Template Sequence	G	Y	S	R	L	Q	V	K	L	G	A	R	.	.	.	.	.	.	.	.	P	I	E	I	D	I	E	A	I	R	K	V	W	E	A	V	R	G	T	G	I	A	L	A	A	D	G	N	R	G	W	T	T	R	D	A	L	R	F	S	R	E	C	P	D	I	P	F	.	V	X	E	Q	P	C	N	.	.	S	F
Template Known Secondary structure	T		S								S	S	.	.	.	.	.	.	.	.																	T	T	S									T	T															T	T	S			.				S		S	S	.	.	S
Template Predicted Secondary structure													.	.	.	.	.	.	.	.																																																	.								.	.
Template SS confidence
	156	.	.	.	160	.	.	.	.	.	.	.									.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.		.	.	.	.	220	.	.			.	.

	218	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.		.	290	.	.	.	.	.	.
Predicted Secondary structure																																																																								.
Query SS confidence																																																																								.
Query Sequence	E	Y	Y	P	K	L	A	A	Q	T	H	I	P	L	A	A	G	E	R	M	F	S	R	F	D	F	K	R	V	L	E	A	G	G	I	S	I	L	Q	P	D	L	S	H	A	G	G	I	T	E	C	Y	K	I	A	G	M	A	E	A	Y	D	V	T	L	A	P	H	C	P	L	.	G	P	I	A	L	A	A	C
Query Conservation																																																																								.
Alig confidence																																																																								.
Template Conservation
Template Sequence	E	D	L	E	A	I	R	P	L	C	H	H	A	L	Y	X	D	E	D	G	T	S	L	N	T	V	I	T	A	A	A	T	S	L	V	D	G	F	G	X	K	V	S	R	I	G	G	L	Q	H	X	R	A	F	R	D	F	C	A	A	R	N	L	P	H	T	C	D	D	A	W	G	G	D	I	V	S	A	A	C
Template Known Secondary structure							G	G	G			S					S	T	T			S										T	T			S					B					T	S															T						B		S	S		S
Template Predicted Secondary structure
Template SS confidence
	225	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.

	297	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360
Predicted Secondary structure
Query SS confidence
Query Sequence	L	H	I	D	F	V	S	Y	N	A	V	L	Q	E	Q	S	M	G	I	H	Y	N	K	G	A	E	L	L	D	F	V	K	N	K	E	D	F	S	M	V	G	G	F	F	K	P	L	T	K	P	G	L	G	V	E	I	D	E	A	K	V	I	E	F
Query Conservation
Alig confidence																				.	.	.	.	.
Template Conservation																				.	.	.	.	.
Template Sequence	T	H	I	A	S	T	V	L	P	R	L	X	E	G	A	W	L	A	Q	.	.	.	.	.	P	Y	V	A	E	H	Y	D	A	E	N	G	V	R	I	E	G	G	R	I	R	V	P	Q	G	P	G	L	G	L	T	I	D	P	E	R	F	G	P	P
Template Known Secondary structure					T	T	S		G	G	G							S	G	.	.	.	.	.	G	G		S			S	S	T	T	T						T	T							S	S	B	T	S					T	T	T	T		S
Template Predicted Secondary structure																				.	.	.	.	.
Template SS confidence
	305	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.						.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.

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No model constructed - rank, confidence too low

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server

Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]

© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys
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