Phyre 2 alignment of Q6BF17 with c2p88E

Job Description Q6BF17
Confidence 100.00% Date Thu Jan 5 12:37:31 GMT 2012

Rank 41 Aligned Residues 345

% Identity 27% Template c2p88E_

PDB info PDB header:lyase Chain: E: PDB Molecule:mandelate racemase/muconate lactonizing enzyme PDBTitle: crystal structure of n-succinyl arg/lys racemase from2 bacillus cereus atcc 14579

Resolution 2.40 Å

	Insertion relative to template
	Deletion relative to template
	Catalytic residue from the CSA

Detailed help on interpreting your alignment

	1	.	.	.	.	.	.	.	.	10	.	.	.	.																	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.							.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.
Predicted Secondary structure															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																								.	.	.	.	.	.
Query SS confidence															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																								.	.	.	.	.	.
Query Sequence	M	K	I	T	K	I	T	T	Y	R	L	P	P	R	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	W	M	F	L	K	I	E	T	D	E	G	V	V	G	W	G	E	P	V	I	E	G	R	.	.	.	.	.	.	A	R	T	V	E	A	A	V	H	E	L	G	D	Y	L	I	G	Q	D	P	S
Query Conservation															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																								.	.	.	.	.	.
Alig confidence															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																								.	.	.	.	.	.
Template Conservation
Template Sequence	M	K	I	T	A	I	H	L	Y	A	I	R	L	P	L	R	N	P	F	V	I	S	Y	G	S	Y	S	D	M	P	S	I	I	V	K	M	E	T	D	E	G	I	I	G	Y	G	E	G	V	A	D	D	H	V	T	G	E	S	W	E	S	T	F	H	T	L	K	H	T	L	T	P	A	L	I	G	Q	N	P	M
Template Known Secondary structure																						T	T																T	T	S															S													T						T	T			T	T
Template Predicted Secondary structure
Template SS confidence
	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80

	59	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	R	I	N	D	L	W	Q	V	M	Y	R	A	G	F	Y	R	G	G	P	I	L	M	S	A	I	A	G	I	D	Q	A	L	W	D	I	K	G	K	V	L	N	A	P	V	W	Q	L	M	G	G	L	V	R	D	K	I	K	A	Y	S	W	V	G	G	D	R	P	A	D	V	I	D	G	I	K	T	L	R	E	I
Query Conservation
Alig confidence																	.	.	.	.	.
Template Conservation																	.	.	.	.	.
Template Sequence	N	I	E	K	I	H	D	M	M	D	N	T	I	Y	G	V	.	.	.	.	.	P	T	A	K	A	A	I	D	I	A	C	F	D	I	M	G	K	K	L	N	Q	P	V	Y	Q	L	I	G	G	R	Y	H	E	E	F	P	V	T	H	V	L	S	I	A	D	P	E	N	M	A	E	E	A	A	S	M	I	Q	K
Template Known Secondary structure														S			.	.	.	.	.																			T	T	S	B	G	G	G	G	T	T					S										S															T	T
Template Predicted Secondary structure																	.	.	.	.	.
Template SS confidence
	81	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.						.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.

	139	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.		.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.
Predicted Secondary structure																																																			.
Query SS confidence																																																			.
Query Sequence	G	F	D	T	F	K	L	N	G	C	E	E	L	G	L	I	D	N	S	R	A	V	D	A	A	V	N	T	V	A	Q	I	R	E	A	F	G	N	Q	I	E	F	G	L	D	F	H	G	R	V	.	S	A	P	M	A	K	V	L	I	K	E	L	E	P	Y	R	P	L	F	I	E	E	P	V	L	A	E	Q	A
Query Conservation																																																			.
Alig confidence												.	.	.	.	.	.	.	.	.																															.
Template Conservation												.	.	.	.	.	.	.	.	.
Template Sequence	G	Y	Q	S	F	K	M	K	V	G	T	.	.	.	.	.	.	.	.	.	N	V	K	E	D	V	K	R	I	E	A	V	R	E	R	V	G	N	D	I	A	I	R	V	D	V	N	Q	G	W	K	N	S	A	N	T	L	T	A	L	R	S	L	G	H	L	N	I	D	W	I	E	Q	P	V	I	A	D	D	I
Template Known Secondary structure	T										S	.	.	.	.	.	.	.	.	.																T	T	T	S	S							T	T	T	T	B	S										T	S	T	T	T	T		S						B		T	T
Template Predicted Secondary structure												.	.	.	.	.	.	.	.	.
Template SS confidence
	156	.	.	.	160	.	.	.	.	.	.										.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.

	218	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.		.	290	.	.	.	.	.	.
Predicted Secondary structure																																																																								.
Query SS confidence																																																																								.
Query Sequence	E	Y	Y	P	K	L	A	A	Q	T	H	I	P	L	A	A	G	E	R	M	F	S	R	F	D	F	K	R	V	L	E	A	G	G	I	S	I	L	Q	P	D	L	S	H	A	G	G	I	T	E	C	Y	K	I	A	G	M	A	E	A	Y	D	V	T	L	A	P	H	C	P	L	.	G	P	I	A	L	A	A	C
Query Conservation																																																																								.
Alig confidence																																																																								.
Template Conservation
Template Sequence	D	A	M	A	H	I	R	S	K	T	D	L	P	L	M	I	D	E	G	L	K	S	S	R	E	M	R	Q	I	I	K	L	E	A	A	D	K	V	N	I	K	L	M	K	C	G	G	I	Y	P	A	V	K	L	A	H	Q	A	E	M	A	G	I	E	C	Q	V	G	S	M	V	E	S	S	V	A	S	S	A	G
Template Known Secondary structure									T			S					S	T	T			S											T			S										T	S														T	T								S	S
Template Predicted Secondary structure
Template SS confidence
	227	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.

	297	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	L	H	I	D	F	V	S	Y	N	A	V	L	Q	E	Q	S	M	G	I	H	Y	N	K	G	A	E	L	L	D	F	V	K	N	K	E	D	F	S	M	V	G	G	F	F	K	P	L	T	K	P	G	L	G	V	E	I	D	E	A	K	V	I	E	F	S	K	N	A	P	D	W	R
Query Conservation
Alig confidence																									.	.	.	.	.	.	.	.	.
Template Conservation																									.	.	.	.	.	.	.	.	.
Template Sequence	F	H	V	A	F	S	K	K	I	I	T	S	V	E	L	T	G	P	L	K	F	T	K	D	.	.	.	.	.	.	.	.	.	I	G	N	L	H	Y	D	V	P	F	I	R	L	N	E	K	P	G	L	G	I	E	I	N	E	D	T	L	Q	E	L	T	V	F	Q	D	I	V	R
Template Known Secondary structure								T	T								G	G	G	T	B	S			.	.	.	.	.	.	.	.	.	S	S						T	T								S	B	T
Template Predicted Secondary structure																									.	.	.	.	.	.	.	.	.
Template SS confidence
	307	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330										.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.

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No model constructed - rank, confidence too low

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server

Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]

© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys
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