Job Description Q6BF17 Confidence 100.00% Date Thu Jan 5 12:37:31 GMT 2012 Rank 74 Aligned Residues 344 % Identity 17% Template c2oz8B_ PDB info PDB header:structural genomics, unknown function Chain: B: PDB Molecule:mll7089 protein; PDBTitle: crystal structure of putative mandelate racemase from mesorhizobium2 loti Resolution 2.48 Å

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		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.																	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.						.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																								.	.	.	.	.
Query SS confidence																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																								.	.	.	.	.
Query Sequence		M	K	I	T	K	I	T	T	Y	R	L	P	P	R	W	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	M	F	L	K	I	E	T	D	E	G	V	V	G	W	G	E	P	V	I	E	G	R	A	.	.	.	.	.	R	T	V	E	A	A	V	H	E	L	G	D	Y	L	I	G	Q	D	P	S	R
Query Conservation																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																								.	.	.	.	.
Alig confidence																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																								.	.	.	.	.
Template Conservation
Template Sequence		L	S	L	S	H	F	R	I	T	R	F	Q	F	A	R	D	R	V	I	G	D	S	Q	V	R	A	D	D	V	N	V	A	A	L	E	L	V	S	E	S	G	E	V	G	L	G	F	I	Q	T	L	F	N	P	L	P	D	Q	Q	E	I	E	S	V	F	E	H	E	V	W	P	S	L	K	G	N	R	A	I	A
Template Known Secondary structure																							S	S																T	T	S										S	S	S																T					T	T
Template Predicted Secondary structure
Template SS confidence
		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80
		60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.		.	.	.	.	.	.	130	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																																		.
Query SS confidence																																																																		.
Query Sequence		I	N	D	L	W	Q	V	M	Y	R	A	G	F	Y	R	G	G	P	I	L	M	S	A	I	A	G	I	D	Q	A	L	W	D	I	K	G	K	V	L	N	A	P	V	W	Q	L	M	G	G	L	V	R	D	K	I	K	A	Y	S	W	V	G	G	D	.	R	P	A	D	V	I	D	G	I	K	T	L	R	E	I
Query Conservation																																																																		.
Alig confidence					.	.	.	.	.	.	.	.	.																																																					.
Template Conservation					.	.	.	.	.	.	.	.	.
Template Sequence		L	V	H	.	.	.	.	.	.	.	.	.	R	V	N	R	P	R	Y	S	L	P	F	H	E	A	V	Q	V	A	L	W	D	L	A	A	K	E	A	G	L	P	L	H	V	L	L	G	S	R	R	N	R	V	K	A	Y	A	S	G	L	D	F	H	L	D	D	D	A	F	V	S	L	F	S	H	A	A	S	I
Template Known Secondary structure			T	T	.	.	.	.	.	.	.	.	.									S	S																	T	T		B					T	T		S		S										B	T	T	S															T
Template Predicted Secondary structure					.	.	.	.	.	.	.	.	.
Template SS confidence
		81	.	.										.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.
		139	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.			.	.	.	.	.	.	.	210	.	.	.	.	.	.
Predicted Secondary structure																																																																		.	.
Query SS confidence																																																																		.	.
Query Sequence		G	F	D	T	F	K	L	N	G	C	E	E	L	G	L	I	D	N	S	R	A	V	D	A	A	V	N	T	V	A	Q	I	R	E	A	F	G	N	Q	I	E	F	G	L	D	F	H	G	R	V	S	A	P	M	A	K	V	L	I	K	E	L	E	P	.	.	Y	R	P	L	F	I	E	E	P	V	L	A	E	Q
Query Conservation																																																																		.	.
Alig confidence													.	.	.	.	.	.	.	.																																														.	.
Template Conservation													.	.	.	.	.	.	.	.
Template Sequence		G	Y	S	A	F	K	I	K	V	G	H	.	.	.	.	.	.	.	.	R	D	F	D	R	D	L	R	R	L	E	L	L	K	T	C	V	P	A	G	S	K	V	M	I	D	P	N	E	A	W	T	S	K	E	A	L	T	K	L	V	A	I	R	E	A	G	H	D	L	L	W	V	E	D	P	I	L	R	H	D
Template Known Secondary structure		T											.	.	.	.	.	.	.	.	S	S														T	S		T	T								T	T		B															T	T								S		B		T	T
Template Predicted Secondary structure													.	.	.	.	.	.	.	.
Template SS confidence
		158	.	160	.	.	.	.	.	.	.	.									.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.
		217	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	E	Y	Y	P	K	L	A	A	Q	T	H	I	P	L	A	A	G	E	R	M	F	S	R	F	D	F	K	R	V	L	E	A	G	G	I	S	I	L	Q	P	D	L	S	H	A	G	G	I	T	E	C	Y	K	I	A	G	M	A	E	A	Y	D	V	T	L	A	P	H	C	P	L	G	P	I	A	L	A	A	C
Query Conservation
Alig confidence																																												.	.	.	.																												.	.	.	.
Template Conservation																																												.	.	.	.																												.	.	.	.
Template Sequence		H	D	G	L	R	T	L	R	H	A	V	T	W	T	Q	I	N	S	G	E	Y	L	D	L	Q	G	K	R	L	L	L	E	A	H	A	A	D	I	L	N	V	H	.	.	.	.	G	Q	V	T	D	V	M	R	I	G	W	L	A	A	E	L	G	I	P	I	S	I	G	N	T	F	L	.	.	.	.	E	A	G
Template Known Secondary structure														S	S						T	T												T	T			S						.	.	.	.	S																T									G	G	.	.	.	.	G	T	T
Template Predicted Secondary structure																																												.	.	.	.																												.	.	.	.
Template SS confidence
		230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.					.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.					.	300	.
		297	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	H	I	D	F	V	S	Y	N	A	V	L	Q	E	Q	S	M	G	I	H	Y	N	K	G	A	E	L	L	D	F	V	K	N	K	E	D	F	S	M	V	G	G	F	F	K	P	L	T	K	P	G	L	G	V	E	I	D	E	A	K	V	I	E	F	S	K	N	A	P	D	W	R	N	P	L	W	R	H	E	D
Query Conservation
Alig confidence																						.	.	.	.	.	.	.	.	.
Template Conservation																						.	.	.	.	.	.	.	.	.
Template Sequence		V	H	M	A	V	A	L	P	E	V	E	W	L	E	Y	S	F	Q	N	F	.	.	.	.	.	.	.	.	.	D	H	L	V	E	Q	P	I	E	I	R	D	G	Y	A	Y	A	P	D	R	P	G	H	G	L	V	L	S	E	K	A	R	G	E	W	S	R	P	R	R	L	A	R	S	E	L	G	A	A	P	E
Template Known Secondary structure									T	T										T	T	.	.	.	.	.	.	.	.	.	G	G	G	B	S	S						T	T						S	S	S	B	T	S			B								T	B			S				G	G	G			S
Template Predicted Secondary structure																						.	.	.	.	.	.	.	.	.
Template SS confidence
		302	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.										.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.
		377	.
Predicted Secondary structure
Query SS confidence
Query Sequence		N	S
Query Conservation
Alig confidence
Template Conservation
Template Sequence		N	P
Template Known Secondary structure			T
Template Predicted Secondary structure
Template SS confidence
		373	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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