Job Description Q6BF17 Confidence 100.00% Date Thu Jan 5 12:37:31 GMT 2012 Rank 87 Aligned Residues 316 % Identity 15% Template c2oktA_ PDB info PDB header:lyase Chain: A: PDB Molecule:o-succinylbenzoic acid synthetase; PDBTitle: crystal structure of o-succinylbenzoic acid synthetase from2 staphylococcus aureus, ligand-free form Resolution 1.30 Å

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		1	.	.	.	.	.	.	.	.	10	.	.	.																	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.								.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.
Predicted Secondary structure															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																										.	.	.	.	.	.	.
Query SS confidence															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																										.	.	.	.	.	.	.
Query Sequence		M	K	I	T	K	I	T	T	Y	R	L	P	P	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	R	W	M	F	L	K	I	E	T	D	E	G	V	V	G	W	G	E	P	V	I	E	G	R	A	.	.	.	.	.	.	.	R	T	V	E	A	A	V	H	E	L	G	D	Y	L	I	G	Q	D	P
Query Conservation															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																										.	.	.	.	.	.	.
Alig confidence															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																										.	.	.	.	.	.	.
Template Conservation
Template Sequence		L	K	L	T	A	L	H	F	Y	K	Y	S	E	P	F	K	S	Q	I	V	T	P	K	V	T	L	T	H	R	D	C	L	F	I	E	L	I	D	D	K	G	N	A	Y	F	G	E	C	N	A	F	Q	T	D	W	Y	D	H	E	T	I	A	S	V	K	H	V	I	E	Q	W	F	E	D	N	R	N	K	S	F
Template Known Secondary structure		B																					S	S																T	T											B	S	S	T	T	S		S		B																T	T			B
Template Predicted Secondary structure
Template SS confidence
		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80
		58	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	R	I	N	D	L	W	Q	V	M	Y	R	A	G	F	Y	R	G	G	P	I	L	M	S	A	I	A	G	I	D	Q	A	L	W	D	I	K	G	K	V	L	N	A	P	V	W	Q	L	M	G	G	L	V	R	D	K	I	K	A	Y	S	W	V	G	G	D	R	P	A	D	V	I	D	G	I	K	T	L	R	E
Query Conservation
Alig confidence																		.	.	.	.	.	.																		.	.	.																	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																		.	.	.	.	.	.																		.	.	.																	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		E	T	Y	E	A	A	L	K	L	V	D	S	L	E	N	T	.	.	.	.	.	.	P	A	A	R	A	T	I	V	M	A	L	Y	Q	M	F	H	V	.	.	.	L	P	S	F	S	V	A	Y	G	A	T	A	S	G	L	S	.	.	.	.	.	.	.	.	.	.	.	.	.	N	K	Q	L	E	S	L	K	A
Template Known Secondary structure			S							T	T	G	G	G	T	T		.	.	.	.	.	.														T	T			.	.	.													S	S			.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																		.	.	.	.	.	.																		.	.	.																	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		81	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.							.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.				.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.														130	.	.	.	.	.	.	.	.
		138	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	G	F	D	T	F	K	L	N	G	C	E	E	L	G	L	I	D	N	S	R	A	V	D	A	A	V	N	T	V	A	Q	I	R	E	A	F	G	N	Q	I	E	F	G	L	D	F	H	G	R	V	S	A	P	M	A	K	V	L	I	K	E	L	E	P	Y	R	P	L	F	I	E	E	P	V	L	A	E	Q	A
Query Conservation
Alig confidence														.	.	.	.	.	.	.	.	.	.	.	.												.																								.																				.
Template Conservation														.	.	.	.	.	.	.	.	.	.	.	.												.																								.																				.
Template Sequence		T	K	P	T	R	I	K	L	K	W	T	P	.	.	.	.	.	.	.	.	.	.	.	.	Q	I	M	H	Q	I	R	V	L	R	E	.	L	D	F	H	F	Q	L	V	I	D	A	N	E	S	L	D	R	Q	D	F	T	Q	L	.	Q	L	L	A	R	E	Q	V	L	Y	I	E	E	P	F	K	D	I	S	.
Template Known Secondary structure					S								T	.	.	.	.	.	.	.	.	.	.	.	.	T									T	T	.	S	S	S									T	T				G	G	G					.				G	G	G										S	S	G	G	.
Template Predicted Secondary structure														.	.	.	.	.	.	.	.	.	.	.	.												.																								.																				.
Template SS confidence
		139	140	.	.	.	.	.	.	.	.	.	150													.	.	.	.	.	.	.	.	.	160	.		.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.		.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.
		218	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.		.	290	.	.	.	.	.	.
Predicted Secondary structure																																																																									.
Query SS confidence																																																																									.
Query Sequence		E	Y	Y	P	K	L	A	A	Q	T	H	I	P	L	A	A	G	E	R	M	F	S	R	F	D	F	K	R	V	L	E	A	G	G	I	S	I	L	Q	P	D	L	S	H	A	G	G	I	T	E	C	Y	K	I	A	G	M	A	E	A	Y	D	V	T	L	A	P	H	C	P	L	.	G	P	I	A	L	A	A	C
Query Conservation																																																																									.
Alig confidence		.																																																																							.
Template Conservation		.
Template Sequence		.	M	L	D	E	V	A	D	G	T	I	P	P	I	A	L	D	E	K	A	T	S	L	L	D	I	I	N	L	I	E	L	Y	N	V	K	V	V	V	L	K	P	F	R	L	G	G	I	D	K	V	Q	T	A	I	D	T	L	K	S	H	G	A	K	V	V	I	G	G	M	Y	E	Y	G	L	S	R	Y	F	T
Template Known Secondary structure		.	G	G	G	G	S		T	T	S	S						S	T	T														S													T	S	G	G	G											T	T						B		S	S
Template Predicted Secondary structure		.
Template SS confidence
			204	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.
		297	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	H	I	D	F	V	S	Y	N	A	V	L	Q	E	Q	S	M	G	I	H	Y	N	K	G	A	E	L	L	D	F	V	K	N	K	E	D	F	S	M	V	G	G	F	F	K	P	L	T	K	P	G	L	G	V	E	I	D	E	A	K	V	I	E	F	S	K	N	A	P	D	W
Query Conservation
Alig confidence					.						.	.	.	.	.	.	.																																.	.				.	.	.
Template Conservation					.						.	.	.	.	.	.	.																																.	.				.	.	.
Template Sequence		A	M	L	.	A	R	K	G	D	.	.	.	.	.	.	.	Y	P	G	D	V	T	P	A	G	Y	Y	F	E	Q	D	V	V	A	H	S	G	I	L	K	E	G	R	L	E	F	R	.	.	P	P	L	.	.	.	V	D	I	T	Q	L	Q	P	Y	E	G	H	H	H	H	H
Template Known Secondary structure					.		T	T	S	S	.	.	.	.	.	.	.	S			B				T	T	S	S		S	S		S	S	T	T	T	T				T	T						.	.				.	.	.			G	G	G				S	S	S	T	T
Template Predicted Secondary structure					.						.	.	.	.	.	.	.																																.	.				.	.	.
Template SS confidence
		283	.	.		.	.	.	.	290								.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.			.	.	.				.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions