Job Description Q6BF17 Confidence 100.00% Date Thu Jan 5 12:37:31 GMT 2012 Rank 9 Aligned Residues 356 % Identity 31% Template c2o56D_ PDB info PDB header:structural genomics, unknown function Chain: D: PDB Molecule:putative mandelate racemase; PDBTitle: crystal structure of a member of the enolase superfamily from2 salmonella typhimurium Resolution 2.00 Å

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		1	.	.	.	.	.	.	.	.	10	.	.	.					.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.			.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.
Predicted Secondary structure															.	.	.	.																								.	.																																						.
Query SS confidence															.	.	.	.																								.	.																																						.
Query Sequence		M	K	I	T	K	I	T	T	Y	R	L	P	P	.	.	.	.	R	W	M	F	L	K	I	E	T	D	E	G	V	V	G	W	G	E	P	V	I	E	G	.	.	R	A	R	T	V	E	A	A	V	H	E	L	G	D	Y	L	I	G	Q	D	P	S	R	I	N	D	L	W	Q	V	M	Y	R	A	G	F	Y	.
Query Conservation															.	.	.	.																								.	.																																						.
Alig confidence															.	.	.	.																								.	.																																						.
Template Conservation
Template Sequence		M	K	I	T	S	V	D	I	I	D	V	A	N	D	F	K	W	R	P	V	V	V	K	I	N	T	D	E	G	I	S	G	F	G	E	V	G	L	A	Y	G	V	G	A	S	A	G	I	G	M	A	K	D	L	S	A	I	I	I	G	M	D	P	M	N	N	E	A	I	W	E	K	M	L	K	K	T	F	W	G
Template Known Secondary structure																												T	T	S								S		S	S	S	S																	T	T	S		T	T												S	S	S	G	G
Template Predicted Secondary structure
Template SS confidence
		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.
			74	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.													.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Predicted Secondary structure		.																																																		.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.																																																		.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	R	G	G	P	I	L	M	S	A	I	A	G	I	D	Q	A	L	W	D	I	K	G	K	V	L	N	A	P	V	W	Q	L	M	G	G	L	V	R	D	K	I	K	A	Y	S	W	V	G	G	.	.	.	.	.	.	.	.	.	.	.	.	D	R	P	A	D	V	I	D	G	I	K	T	L	R	E	I	G	F
Query Conservation		.																																																		.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.																																																		.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		Q	G	G	G	G	I	F	S	A	A	M	S	G	I	D	I	A	L	W	D	I	K	G	K	A	W	G	V	P	L	Y	K	M	L	G	G	K	S	R	E	K	I	R	T	Y	A	S	Q	L	Q	F	G	W	G	D	G	S	D	K	D	M	L	T	E	P	E	Q	Y	A	Q	A	A	L	T	A	V	S	E	G	Y
Template Known Secondary structure		G	G																									T		B					T	T			S		S									G	G	G			S	T	T		T	T					S														T	T
Template Predicted Secondary structure
Template SS confidence
		87	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.
		141	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.											.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Predicted Secondary structure																			.	.	.	.	.	.	.	.	.	.
Query SS confidence																			.	.	.	.	.	.	.	.	.	.
Query Sequence		D	T	F	K	L	N	G	C	E	E	L	G	L	I	D	N	S	.	.	.	.	.	.	.	.	.	.	R	A	V	D	A	A	V	N	T	V	A	Q	I	R	E	A	F	G	N	Q	I	E	F	G	L	D	F	H	G	R	V	S	A	P	M	A	K	V	L	I	K	E	L	E	P	Y	R	P	L	F	I	E	E
Query Conservation																			.	.	.	.	.	.	.	.	.	.
Alig confidence																			.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		D	A	I	K	V	D	T	V	A	M	D	R	H	G	N	W	N	Q	Q	N	L	N	G	P	L	T	D	K	I	L	R	L	G	Y	D	R	M	A	A	I	R	D	A	V	G	P	D	V	D	I	I	A	E	M	H	A	F	T	D	T	T	S	A	I	Q	F	G	R	M	I	E	E	L	G	I	F	Y	Y	E	E
Template Known Secondary structure		S							S	S	B		T	T	S		B	S		S				S	S																						T	T	S							T	T		S													G	G	G
Template Predicted Secondary structure
Template SS confidence
		167	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.
		211	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290
Predicted Secondary structure
Query SS confidence
Query Sequence		P	V	L	A	E	Q	A	E	Y	Y	P	K	L	A	A	Q	T	H	I	P	L	A	A	G	E	R	M	F	S	R	F	D	F	K	R	V	L	E	A	G	G	I	S	I	L	Q	P	D	L	S	H	A	G	G	I	T	E	C	Y	K	I	A	G	M	A	E	A	Y	D	V	T	L	A	P	H	C	P	L	G	P
Query Conservation
Alig confidence
Template Conservation
Template Sequence		P	V	M	P	L	N	P	A	Q	M	K	Q	V	A	D	K	V	N	I	P	L	A	A	G	E	R	I	Y	W	R	W	G	Y	R	P	F	L	E	N	G	S	L	S	V	I	Q	P	D	I	C	T	C	G	G	I	T	E	V	K	K	I	C	D	M	A	H	V	Y	D	K	T	V	Q	I	H	V	C	G	G	P
Template Known Secondary structure		S	S		S	S	S													S						T	T													T	T			S						T	T	T	T	T														T	T	T									S
Template Predicted Secondary structure
Template SS confidence
		247	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.
		291	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	A	L	A	A	C	L	H	I	D	F	V	S	Y	N	A	V	L	Q	E	Q	S	M	G	I	H	Y	N	K	G	A	E	L	L	D	F	V	K	N	K	E	D	F	S	M	V	G	G	F	F	K	P	L	T	K	P	G	L	G	V	E	I	D	E	A	K	V	I	E	F	S
Query Conservation
Alig confidence																											.	.	.	.	.
Template Conservation																											.	.	.	.	.
Template Sequence		I	S	T	A	V	A	L	H	M	E	T	A	I	P	N	F	V	I	H	E	L	H	R	Y	A	.	.	.	.	.	L	L	E	P	N	T	Q	T	C	K	Y	N	Y	L	P	K	N	G	M	Y	E	V	P	E	L	P	G	I	G	Q	E	L	T	E	E	T	M	K	K	S	P
Template Known Secondary structure															S	S	B							G	G	G	.	.	.	.	.	G	S					T	T	B	S						B	T	T							S	S	B	T	S			B							T	S
Template Predicted Secondary structure																											.	.	.	.	.
Template SS confidence
		327	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.						.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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