Phyre 2 alignment of Q6BF17 with c2hzgB

Job Description Q6BF17
Confidence 100.00% Date Thu Jan 5 12:37:31 GMT 2012

Rank 38 Aligned Residues 359

% Identity 21% Template c2hzgB_

PDB info PDB header:isomerase Chain: B: PDB Molecule:mandelate racemase/muconate lactonizing enzyme/enolase PDBTitle: crystal stucture of predicted mandelate racemase from rhodobacter2 sphaeroides

Resolution 2.02 Å

	Insertion relative to template
	Deletion relative to template
	Catalytic residue from the CSA

Detailed help on interpreting your alignment

	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.												.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.								.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.
Predicted Secondary structure																.	.	.	.	.	.	.	.	.	.	.																													.	.	.	.	.	.	.
Query SS confidence																.	.	.	.	.	.	.	.	.	.	.																													.	.	.	.	.	.	.
Query Sequence	M	K	I	T	K	I	T	T	Y	R	L	P	P	R	W	.	.	.	.	.	.	.	.	.	.	.	M	F	L	K	I	E	T	D	E	G	V	V	G	W	G	E	P	V	I	E	G	R	A	R	T	V	E	A	.	.	.	.	.	.	.	A	V	H	E	L	G	D	Y	L	I	G	Q	D	P	S	R	I	N	D
Query Conservation																.	.	.	.	.	.	.	.	.	.	.																													.	.	.	.	.	.	.
Alig confidence																.	.	.	.	.	.	.	.	.	.	.									.																				.	.	.	.	.	.	.
Template Conservation																																			.
Template Sequence	L	K	I	D	A	V	D	L	F	Y	L	S	M	P	E	V	T	D	A	A	D	G	S	Q	D	A	L	L	V	R	V	A	A	G	.	G	H	I	G	W	G	E	C	E	A	A	P	L	P	S	I	A	A	F	V	C	P	K	S	H	G	V	C	R	P	V	S	D	S	V	L	G	Q	R	L	D	G	P	D	D
Template Known Secondary structure		B												S	S			S	S	S		G	G	G										T	.	T								S	S														S	B	T	T	B			G	G	G	G	T	T	T		B		S	S
Template Predicted Secondary structure																																			.
Template SS confidence
	3	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.		.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.

	63	.	.	.	.	.	.	70	.	.	.	.	.		.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.		.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Predicted Secondary structure														.																																																.
Query SS confidence														.																																																.
Query Sequence	L	W	Q	V	M	Y	R	A	G	F	Y	R	G	.	G	P	I	L	M	S	A	I	A	G	I	D	Q	A	L	W	D	I	K	G	K	V	L	N	A	P	V	W	Q	L	M	G	G	L	V	R	D	K	I	K	A	Y	S	W	V	G	G	.	D	R	P	A	D	V	I	D	G	I	K	T	L	R	E	I	G	F
Query Conservation														.																																																.
Alig confidence														.																																																.
Template Conservation
Template Sequence	I	A	R	I	A	A	L	V	G	Y	N	S	M	D	L	L	Q	A	P	H	M	L	S	G	I	E	M	A	L	W	D	L	L	G	R	R	L	S	A	P	A	W	A	L	L	G	Y	S	A	S	H	G	K	R	P	Y	A	S	L	L	F	G	D	T	P	Q	E	T	L	E	R	A	R	A	A	R	R	D	G	F
Template Known Secondary structure												T	T	T		T	T																				T	T		B					T	T		S					B										S	S														T	T
Template Predicted Secondary structure
Template SS confidence
	82	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.

	141	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.			.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																	.	.
Query SS confidence																																																	.	.
Query Sequence	D	T	F	K	L	N	G	C	E	E	L	G	L	I	D	N	S	R	A	V	D	A	A	V	N	T	V	A	Q	I	R	E	A	F	G	N	Q	I	E	F	G	L	D	F	H	G	R	V	.	.	S	A	P	M	A	K	V	L	I	K	E	L	E	P	Y	R	P	L	F	I	E	E	P	V	L	A	E	Q	A	E
Query Conservation																																																	.	.
Alig confidence													.	.	.	.	.																																.	.
Template Conservation													.	.	.	.	.
Template Sequence	A	A	V	K	F	G	W	G	P	I	G	R	.	.	.	.	.	G	T	V	A	A	D	A	D	Q	I	M	A	A	R	E	G	L	G	P	D	G	D	L	M	V	D	V	G	Q	I	F	G	E	D	V	E	A	A	A	A	R	L	P	T	L	D	A	A	G	V	L	W	L	E	E	P	F	D	A	G	A	L	A
Template Known Secondary structure	S						S	T	T	T	T	S	.	.	.	.	.	S																		S	S	S							T	T	T	T	T	T							T	T							T	T								S		T	T
Template Predicted Secondary structure													.	.	.	.	.
Template SS confidence
	162	.	.	.	.	.	.	.	170	.	.	.						.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.

	219	220	.	.	.	.	.	.		.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.
Predicted Secondary structure									.
Query SS confidence									.
Query Sequence	Y	Y	P	K	L	A	A	Q	.	T	H	I	P	L	A	A	G	E	R	M	F	S	R	F	D	F	K	R	V	L	E	A	G	G	I	S	I	L	Q	P	D	L	S	H	A	G	G	I	T	E	C	Y	K	I	A	G	M	A	E	A	Y	D	V	T	L	A	P	H	C	P	L	G	P	I	A	L	A	A	C	L
Query Conservation									.
Alig confidence									.
Template Conservation
Template Sequence	A	H	A	A	L	A	G	R	G	A	R	V	R	I	A	G	G	E	A	A	H	N	F	H	M	A	Q	H	L	M	D	Y	G	R	I	G	F	I	Q	I	D	C	G	R	I	G	G	L	G	P	A	K	R	V	A	D	A	A	Q	A	R	G	I	T	Y	V	N	H	T	F	T	S	H	L	A	L	S	A	S	L
Template Known Secondary structure							T	T			S	S						T	T			S										T	S			S										T	S															T									S
Template Predicted Secondary structure
Template SS confidence
	237	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.

	298	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.		.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.
Predicted Secondary structure																																							.
Query SS confidence																																							.
Query Sequence	H	I	D	F	V	S	Y	N	A	V	L	Q	E	Q	S	M	G	I	H	Y	N	K	G	A	E	L	L	D	F	V	K	N	K	E	D	F	S	M	.	V	G	G	F	F	K	P	L	T	K	P	G	L	G	V	E	I	D	E	A	K	V	I	E	F	S	K	N	A	P	D	W	R	N	P	L
Query Conservation																																							.
Alig confidence																		.	.	.	.	.	.																.
Template Conservation																		.	.	.	.	.	.
Template Sequence	Q	P	F	A	G	L	E	A	D	R	I	C	E	Y	P	A	A	.	.	.	.	.	.	P	Q	Q	L	A	L	D	I	T	G	D	H	I	R	P	D	A	E	G	L	I	R	A	P	E	A	P	G	L	G	L	Q	V	A	A	S	A	L	R	R	Y	L	V	E	T	E	I	R	I	G	G	Q
Template Known Secondary structure	G	G	G	T	T		T	T									S	.	.	.	.	.	.								T	B	S	S						T	T	S		B		S		S	S	S	B	T				B									B								T	T
Template Predicted Secondary structure																		.	.	.	.	.	.
Template SS confidence
	317	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.							.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.

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No model constructed - rank, confidence too low

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server

Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]

© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys
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