Job Description Q6BF17 Confidence 100.00% Date Thu Jan 5 12:37:31 GMT 2012 Rank 14 Aligned Residues 358 % Identity 30% Template c2gl5A_ PDB info PDB header:structural genomics, unknown function Chain: A: PDB Molecule:putative dehydratase protein; PDBTitle: crystal structure of putative dehydratase from salmonella thyphimurium Resolution 1.60 Å

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		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.											.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.			.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.
Predicted Secondary structure																	.	.	.	.	.	.	.	.	.	.																				.	.
Query SS confidence																	.	.	.	.	.	.	.	.	.	.																				.	.
Query Sequence		M	K	I	T	K	I	T	T	Y	R	L	P	P	R	W	.	.	.	.	.	.	.	.	.	.	M	F	L	K	I	E	T	D	E	G	V	V	G	W	G	E	P	V	I	.	.	E	G	R	A	R	T	V	E	A	A	V	H	E	L	G	D	Y	L	I	G	Q	D	P	S	R	I	N	D	L	W	Q	V	M	Y
Query Conservation																	.	.	.	.	.	.	.	.	.	.																				.	.
Alig confidence																	.	.	.	.	.	.	.	.	.	.																				.	.
Template Conservation
Template Sequence		L	K	I	T	S	I	E	V	F	D	C	E	L	K	K	R	D	Q	T	M	S	S	Y	N	P	V	L	I	R	V	N	T	D	S	G	L	S	G	I	G	E	V	G	L	A	Y	G	A	G	A	K	A	G	V	G	I	I	R	D	L	A	P	L	I	V	G	E	D	P	L	N	I	E	K	I	W	E	F	F	F
Template Known Secondary structure														G	G	G	T		G	G	G	T	T											T	T	S								S		S	S	S	T	T												G	G	G	T	T	T	S		T	T
Template Predicted Secondary structure
Template SS confidence
		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80
		69	70	.	.	.			.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.											120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.
Predicted Secondary structure							.	.																																															.	.	.	.	.	.	.	.	.	.
Query SS confidence							.	.																																															.	.	.	.	.	.	.	.	.	.
Query Sequence		R	A	G	F	Y	.	.	R	G	G	P	I	L	M	S	A	I	A	G	I	D	Q	A	L	W	D	I	K	G	K	V	L	N	A	P	V	W	Q	L	M	G	G	L	V	R	D	K	I	K	A	Y	S	W	.	.	.	.	.	.	.	.	.	.	V	G	G	D	R	P	A	D	V	I	D	G	I	K	T	L	R
Query Conservation							.	.																																															.	.	.	.	.	.	.	.	.	.
Alig confidence							.	.																																															.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		R	K	T	F	W	G	M	G	G	G	N	V	F	Y	A	G	M	S	A	I	D	I	A	L	W	D	I	K	G	K	Y	L	G	V	P	V	Y	Q	L	L	G	G	K	T	N	E	K	L	R	T	Y	A	S	Q	L	Q	F	G	W	G	D	K	N	H	I	L	V	T	P	E	E	Y	A	E	A	A	R	A	A	L
Template Known Secondary structure			S	S	S	G	G	G	S																									T	S	B					T	T	S		S		S	S								G	G	G			T	T			S				S
Template Predicted Secondary structure
Template SS confidence
		81	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160
		137	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.																.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.
Predicted Secondary structure																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		E	I	G	F	D	T	F	K	L	N	G	C	E	E	L	G	L	I	D	N	S	R	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	A	V	D	A	A	V	N	T	V	A	Q	I	R	E	A	F	G	N	Q	I	E	F	G	L	D	F	H	G	R	V	S	A	P	M	A	K	V	L	I	K	E	L	E
Query Conservation																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		D	D	G	Y	D	A	I	K	V	D	P	L	E	I	D	R	N	G	D	D	C	V	F	Q	N	R	N	R	N	Y	S	G	L	L	L	A	D	Q	L	K	M	G	E	A	R	I	A	A	M	R	E	A	M	G	D	D	A	D	I	I	V	E	I	H	S	L	L	G	T	N	S	A	I	Q	F	A	K	A	I	E
Template Known Secondary structure			T	T		S						S	S	S	B		T	T	S		B	T	T	T	S	S			G	G	G	G	S																							S	S	S							T	T		S													G
Template Predicted Secondary structure
Template SS confidence
		161	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
		202	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.
Predicted Secondary structure
Query SS confidence
Query Sequence		P	Y	R	P	L	F	I	E	E	P	V	L	A	E	Q	A	E	Y	Y	P	K	L	A	A	Q	T	H	I	P	L	A	A	G	E	R	M	F	S	R	F	D	F	K	R	V	L	E	A	G	G	I	S	I	L	Q	P	D	L	S	H	A	G	G	I	T	E	C	Y	K	I	A	G	M	A	E	A	Y	D	V	T
Query Conservation
Alig confidence
Template Conservation
Template Sequence		K	Y	R	I	F	L	Y	E	E	P	I	H	P	L	N	S	D	N	M	Q	K	V	S	R	S	T	T	I	P	I	A	T	G	E	R	S	Y	T	R	W	G	Y	R	E	L	L	E	K	Q	S	I	A	V	A	Q	P	D	L	C	L	C	G	G	I	T	E	G	K	K	I	C	D	Y	A	N	I	Y	D	T	T
Template Known Secondary structure		G	G								S	S		S	S													S	S						T	T			T	T									T	T			S						T	T	T	T	T														T	T	T
Template Predicted Secondary structure
Template SS confidence
		241	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320
		282	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	A	P	H	C	P	L	G	P	I	A	L	A	A	C	L	H	I	D	F	V	S	Y	N	A	V	L	Q	E	Q	S	M	G	I	H	Y	N	K	G	A	E	L	L	D	F	V	K	N	K	E	D	F	S	M	V	G	G	F	F	K	P	L	T	K	P	G	L	G	V	E	I	D	E	A	K	V	I	E	F	S
Query Conservation
Alig confidence																																				.	.	.	.	.
Template Conservation																																				.	.	.	.	.
Template Sequence		V	Q	V	H	V	C	G	G	P	V	S	T	V	A	A	L	H	M	E	T	A	I	P	N	F	I	I	H	E	H	H	T	N	A	.	.	.	.	.	M	K	A	S	I	R	E	L	C	T	H	D	Y	Q	P	E	N	G	Y	Y	V	A	P	E	Q	P	G	L	G	Q	E	L	N	D	E	V	V	K	E	Y	L
Template Known Secondary structure								S	S															T	T	B							T	T	T	.	.	.	.	.	T						T	T	B	S	S					B	T	T							S	S	B	T	S			B						T	T	T
Template Predicted Secondary structure																																				.	.	.	.	.
Template SS confidence
		321	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.						.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.
		362	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	N
Query Conservation
Alig confidence
Template Conservation
Template Sequence		A	Y
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		396	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions