Job Description Q6BF17 Confidence 100.00% Date Thu Jan 5 12:37:31 GMT 2012 Rank 75 Aligned Residues 340 % Identity 17% Template c1wufB_ PDB info PDB header:structural genomics, unknown function Chain: B: PDB Molecule:hypothetical protein lin2664; PDBTitle: crystal structure of protein gi:16801725, member of enolase2 superfamily from listeria innocua clip11262 Resolution 2.90 Å

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		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.																	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.									.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.
Predicted Secondary structure																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																							.	.	.	.	.	.	.	.
Query SS confidence																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																							.	.	.	.	.	.	.	.
Query Sequence		M	K	I	T	K	I	T	T	Y	R	L	P	P	R	W	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	M	F	L	K	I	E	T	D	E	G	V	V	G	W	G	E	P	V	I	E	G	R	.	.	.	.	.	.	.	.	A	R	T	V	E	A	A	V	H	E	L	G	D	Y	L	I	G	Q	D
Query Conservation																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																							.	.	.	.	.	.	.	.
Alig confidence																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																							.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		M	Y	F	Q	K	A	R	L	I	H	A	E	L	P	L	L	A	P	F	K	T	S	Y	G	E	L	K	S	K	D	F	Y	I	I	E	L	I	N	E	E	G	I	H	G	Y	G	E	L	E	A	F	P	L	P	D	Y	T	E	E	T	L	S	S	A	I	L	I	I	K	E	Q	L	L	P	L	L	A	Q	R	K
Template Known Secondary structure																							T	T																S	S	S											S	S	T	T	S	S	S													T	T
Template Predicted Secondary structure
Template SS confidence
		2001	.	.	.	.	.	.	.	.	2010	.	.	.	.	.	.	.	.	.	2020	.	.	.	.	.	.	.	.	.	2030	.	.	.	.	.	.	.	.	.	2040	.	.	.	.	.	.	.	.	.	2050	.	.	.	.	.	.	.	.	.	2060	.	.	.	.	.	.	.	.	.	2070	.	.	.	.	.	.	.	.	.	2080
		57	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		P	S	R	I	N	D	L	W	Q	V	M	Y	R	A	G	F	Y	R	G	G	P	I	L	M	S	A	I	A	G	I	D	Q	A	L	W	D	I	K	G	K	V	L	N	A	P	V	W	Q	L	M	G	G	L	V	R	D	K	I	K	A	Y	S	W	V	G	G	D	R	P	A	D	V	I	D	G	I	K	T	L	R
Query Conservation
Alig confidence																			.	.	.	.	.	.
Template Conservation																			.	.	.	.	.	.
Template Sequence		I	R	K	P	E	E	I	Q	E	L	F	S	W	I	Q	G	N	.	.	.	.	.	.	E	M	A	K	A	A	V	E	L	A	V	W	D	A	F	A	K	M	E	K	R	S	L	A	K	M	I	G	A	T	K	E	S	I	K	V	G	V	S	I	G	L	Q	Q	N	V	E	T	L	L	Q	L	V	N	Q	Y	V
Template Known Secondary structure			S	S	T	T						T	T	T	S		S		.	.	.	.	.	.																			T	T	S	B					T	T				S				B								S
Template Predicted Secondary structure																			.	.	.	.	.	.
Template SS confidence
		2081	.	.	.	.	.	.	.	.	2090	.	.	.	.	.	.	.							.	.	2100	.	.	.	.	.	.	.	.	.	2110	.	.	.	.	.	.	.	.	.	2120	.	.	.	.	.	.	.	.	.	2130	.	.	.	.	.	.	.	.	.	2140	.	.	.	.	.	.	.	.	.	2150	.	.	.	.
		137	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	I	G	F	D	T	F	K	L	N	G	C	E	E	L	G	L	I	D	N	S	R	A	V	D	A	A	V	N	T	V	A	Q	I	R	E	A	F	G	N	Q	I	E	F	G	L	D	F	H	G	R	V	S	A	P	M	A	K	V	L	I	K	E	L	E	P	Y	R	P	L	F	I	E	E	P	V	L	A	E	Q
Query Conservation
Alig confidence																.	.	.	.	.	.	.	.	.	.	.															.																			.
Template Conservation																.	.	.	.	.	.	.	.	.	.	.															.																			.
Template Sequence		D	Q	G	Y	E	R	V	K	L	K	I	A	P	N	.	.	.	.	.	.	.	.	.	.	.	K	D	I	Q	F	V	E	A	V	R	K	S	F	P	.	K	L	S	L	M	A	D	A	N	S	A	Y	N	R	E	D	F	L	.	L	L	K	E	L	D	Q	Y	D	L	E	M	I	E	Q	P	F	G	T	K	D
Template Known Secondary structure				T									B	T	T	.	.	.	.	.	.	.	.	.	.	.	B	S									T	T		T	.	T	S							T	T				G	G	G			.							T	T	T		S						S		S	S
Template Predicted Secondary structure																.	.	.	.	.	.	.	.	.	.	.															.																			.
Template SS confidence
		2155	.	.	.	.	2160	.	.	.	.	.	.	.	.												.	2170	.	.	.	.	.	.	.	.	.	2180	.	.		.	.	.	.	.	.	.	2190	.	.	.	.	.	.	.	.	.	2200		.	.	.	.	.	.	.	.	.	2210	.	.	.	.	.	.	.	.	.	2220	.
		217	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.		.	290	.	.	.	.	.
Predicted Secondary structure																																																																										.
Query SS confidence																																																																										.
Query Sequence		A	E	Y	Y	P	K	L	A	A	Q	T	H	I	P	L	A	A	G	E	R	M	F	S	R	F	D	F	K	R	V	L	E	A	G	G	I	S	I	L	Q	P	D	L	S	H	A	G	G	I	T	E	C	Y	K	I	A	G	M	A	E	A	Y	D	V	T	L	A	P	H	C	P	L	.	G	P	I	A	L	A	A
Query Conservation																																																																										.
Alig confidence																																																																										.
Template Conservation
Template Sequence		F	V	D	H	A	W	L	Q	K	Q	L	K	T	R	I	C	L	D	E	N	I	R	S	V	K	D	V	E	Q	A	H	S	I	G	S	C	R	A	I	N	L	K	L	A	R	V	G	G	M	S	S	A	L	K	I	A	E	Y	C	A	L	N	E	I	L	V	W	C	G	G	M	L	E	A	G	V	G	R	A	H
Template Known Secondary structure		S								T	T		S	S						T	T			S											T			S						T	G	G	G	T	S														T	T
Template Predicted Secondary structure
Template SS confidence
		2222	.	.	.	.	.	.	.	2230	.	.	.	.	.	.	.	.	.	2240	.	.	.	.	.	.	.	.	.	2250	.	.	.	.	.	.	.	.	.	2260	.	.	.	.	.	.	.	.	.	2270	.	.	.	.	.	.	.	.	.	2280	.	.	.	.	.	.	.	.	.	2290	.	.	.	.	.	.	.	.	.	2300	.
		296	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		C	L	H	I	D	F	V	S	Y	N	A	V	L	Q	E	Q	S	M	G	I	H	Y	N	K	G	A	E	L	L	D	F	V	K	N	K	E	D	F	S	M	V	G	G	F	F	K	P	L	T	K	P	G	L	G	V	E	I	D	E	A	K	V	I	E	F	S	K	N	A	P
Query Conservation
Alig confidence																					.	.	.	.	.	.
Template Conservation																					.	.	.	.	.	.
Template Sequence		N	I	A	L	A	A	R	N	E	F	V	F	P	G	D	I	S	A	S	.	.	.	.	.	.	N	R	F	F	A	E	D	I	V	T	P	A	F	E	L	N	Q	G	R	L	K	V	P	T	N	E	G	I	G	V	T	L	D	L	K	V	L	K	K	Y	T	K	S	T	E
Template Known Secondary structure							T	S	S	S			S		B	S				G	.	.	.	.	.	.	G	G	T	B	S	S		S	B	S	S						S	S							S	S	B	T	S			B							T	T
Template Predicted Secondary structure																					.	.	.	.	.	.
Template SS confidence
		2302	.	.	.	.	.	.	.	2310	.	.	.	.	.	.	.	.	.	2320							.	.	.	.	.	.	.	.	.	2330	.	.	.	.	.	.	.	.	.	2340	.	.	.	.	.	.	.	.	.	2350	.	.	.	.	.	.	.	.	.	2360	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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