Job Description Q6BF17 Confidence 100.00% Date Thu Jan 5 12:37:31 GMT 2012 Rank 61 Aligned Residues 340 % Identity 19% Template c1sjaA_ PDB info PDB header:lyase, isomerase Chain: A: PDB Molecule:n-acylamino acid racemase; PDBTitle: x-ray structure of o-succinylbenzoate synthase complexed2 with n-acetylmethionine Resolution 2.30 Å

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		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.																	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.								.	40	.	.	.	.	.	.	.		.	.	50	.	.	.	.	.	.
Predicted Secondary structure																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																								.	.	.	.	.	.	.										.
Query SS confidence																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																								.	.	.	.	.	.	.										.
Query Sequence		M	K	I	T	K	I	T	T	Y	R	L	P	P	R	W	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	M	F	L	K	I	E	T	D	E	G	V	V	G	W	G	E	P	V	I	E	G	R	A	.	.	.	.	.	.	.	R	T	V	E	A	A	V	H	E	.	L	G	D	Y	L	I	G	Q	D
Query Conservation																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																								.	.	.	.	.	.	.										.
Alig confidence																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.											.													.	.	.	.	.	.	.										.
Template Conservation																																											.
Template Sequence		M	K	L	S	G	V	E	L	R	R	V	Q	M	P	L	V	A	P	F	R	T	S	F	G	T	Q	S	V	R	E	L	L	L	L	R	A	V	T	P	A	G	.	E	G	W	G	E	C	V	T	M	A	G	P	L	Y	S	S	E	Y	N	D	G	A	E	H	V	L	R	H	Y	L	I	P	A	L	L	A	A	E
Template Known Secondary structure																							T	T																S	S		.									B	S	S	S	S	S	S	S		B											T							T	S	S
Template Predicted Secondary structure																																											.
Template SS confidence
		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.		.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.
		57	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		P	S	R	I	N	D	L	W	Q	V	M	Y	R	A	G	F	Y	R	G	G	P	I	L	M	S	A	I	A	G	I	D	Q	A	L	W	D	I	K	G	K	V	L	N	A	P	V	W	Q	L	M	G	G	L	V	R	D	K	I	K	A	Y	S	W	V	G	G	D	R	P	A	D	V	I	D	G	I	K	T	L	R
Query Conservation
Alig confidence																			.	.	.	.	.	.
Template Conservation																			.	.	.	.	.	.
Template Sequence		D	I	T	A	A	K	V	T	P	L	L	A	K	F	K	G	H	.	.	.	.	.	.	R	M	A	K	G	A	L	E	M	A	V	L	D	A	E	L	R	A	H	E	R	S	F	A	A	E	L	G	S	V	R	D	S	V	P	C	G	V	S	V	G	I	M	D	T	I	P	Q	L	L	D	V	V	G	G	Y	L
Template Known Secondary structure		S											T	T	S				.	.	.	.	.	.																				T		B						T				S				B								S	S
Template Predicted Secondary structure																			.	.	.	.	.	.
Template SS confidence
		80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.							.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.
		137	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	I	G	F	D	T	F	K	L	N	G	C	E	E	L	G	L	I	D	N	S	R	A	V	D	A	A	V	N	T	V	A	Q	I	R	E	A	F	G	N	Q	I	E	F	G	L	D	F	H	G	R	V	S	A	P	M	A	K	V	L	I	K	E	L	E	P	Y	R	P	L	F	I	E	E	P	V	L	A	E	Q
Query Conservation
Alig confidence														.	.	.	.	.	.	.	.	.	.	.																																								.
Template Conservation														.	.	.	.	.	.	.	.	.	.	.																																								.
Template Sequence		D	E	G	Y	V	R	I	K	L	K	I	E	.	.	.	.	.	.	.	.	.	.	.	P	G	W	D	V	E	P	V	R	A	V	R	E	R	F	G	D	D	V	L	L	Q	V	D	A	N	T	A	Y	T	L	G	D	A	P	Q	L	A	R	.	L	D	P	F	G	L	L	L	I	E	Q	P	L	E	E	E	D
Template Known Secondary structure				T		S							B	.	.	.	.	.	.	.	.	.	.	.	T	T	B	S													S	S	S							T	T		B		G	G	G						T	.	T	G	G	G			S						B		T	T
Template Predicted Secondary structure														.	.	.	.	.	.	.	.	.	.	.																																								.
Template SS confidence
		154	.	.	.	.	.	160	.	.	.	.	.												.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.		.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.
		217	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.		.	290	.	.	.	.	.
Predicted Secondary structure																																																																										.
Query SS confidence																																																																										.
Query Sequence		A	E	Y	Y	P	K	L	A	A	Q	T	H	I	P	L	A	A	G	E	R	M	F	S	R	F	D	F	K	R	V	L	E	A	G	G	I	S	I	L	Q	P	D	L	S	H	A	G	G	I	T	E	C	Y	K	I	A	G	M	A	E	A	Y	D	V	T	L	A	P	H	C	P	L	.	G	P	I	A	L	A	A
Query Conservation																																																																										.
Alig confidence																																																																										.
Template Conservation
Template Sequence		V	L	G	H	A	E	L	A	R	R	I	Q	T	P	I	C	L	D	E	S	I	V	S	A	R	A	A	A	D	A	I	K	L	G	A	V	Q	I	V	N	I	K	P	G	R	V	G	G	Y	L	E	A	R	R	V	H	D	V	C	A	A	H	G	I	P	V	W	C	G	G	M	I	E	T	G	L	G	R	A	A
Template Known Secondary structure									T	T	T		S	S					S	T	T			S											T			S						T	T	T	T	T	S														T	T									S
Template Predicted Secondary structure
Template SS confidence
		222	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.
		296	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		C	L	H	I	D	F	V	S	Y	N	A	V	L	Q	E	Q	S	M	G	I	H	Y	N	K	G	A	E	L	L	D	F	V	K	N	K	E	D	F	S	M	V	G	G	F	F	K	P	L	T	K	P	G	L	G	V	E	I	D	E	A	K	V	I	E	F	S	K	N	A	P	D
Query Conservation
Alig confidence																		.	.	.	.	.	.	.
Template Conservation																		.	.	.	.	.	.	.
Template Sequence		N	V	A	L	A	S	L	P	N	F	T	L	P	G	D	T	.	.	.	.	.	.	.	S	A	S	D	R	F	Y	K	T	D	I	T	E	P	F	V	L	S	G	G	H	L	P	V	P	T	G	P	G	L	G	V	A	P	I	P	E	L	L	D	E	V	T	T	A	K	V	W
Template Known Secondary structure							T	S	T	T	B		S		B	S		.	.	.	.	.	.	.			G	G	G	T		S	S		S	S	S					S	S	S							S	S	B	T	S										T	T
Template Predicted Secondary structure																		.	.	.	.	.	.	.
Template SS confidence
		302	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.								.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions