Job Description Q6BF17 Confidence 100.00% Date Thu Jan 5 12:37:31 GMT 2012 Rank 100 Aligned Residues 305 % Identity 16% Template c1kczA_ PDB info PDB header:lyase Chain: A: PDB Molecule:beta-methylaspartase; PDBTitle: crystal structure of beta-methylaspartase from clostridium2 tetanomorphum. mg-complex. Resolution 1.90 Å

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		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.																																						.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.
Predicted Secondary structure																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																							.	.	.	.	.	.
Query SS confidence																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																							.	.	.	.	.	.
Query Sequence		M	K	I	T	K	I	T	T	Y	R	L	P	P	R	W	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	M	F	L	K	I	E	T	D	E	G	V	V	G	W	G	E	P	V	I	E	G	R	.	.	.	.	.	.
Query Conservation																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																							.	.	.	.	.	.
Alig confidence																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																							.	.	.	.	.	.
Template Conservation
Template Sequence		M	K	I	V	D	V	L	C	T	P	G	L	T	G	F	Y	F	D	D	Q	R	A	I	K	K	G	A	G	H	D	G	F	T	Y	T	G	S	T	V	T	E	G	F	T	Q	V	R	Q	K	G	E	S	I	S	V	L	L	V	L	E	D	G	Q	V	A	H	G	D	C	A	A	V	Q	Y	S	G	A	G	G	R
Template Known Secondary structure			B												S	S										T	T					T	T				S				S	T	T		S	S	S														T	T	S											T	T	T	T	S	T	T	S
Template Predicted Secondary structure
Template SS confidence
		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80
								38	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.																																																																							.	.	.	.
Query SS confidence		.	.	.	.	.	.																																																																							.	.	.	.
Query Sequence		.	.	.	.	.	.	A	R	T	V	E	A	A	V	H	E	L	G	D	Y	L	I	G	Q	D	P	S	R	I	N	D	L	W	Q	V	M	Y	R	A	G	F	Y	R	G	G	P	I	L	M	S	A	I	A	G	I	D	Q	A	L	W	D	I	K	G	K	V	L	N	A	P	V	W	Q	L	M	G	.	.	.	.
Query Conservation		.	.	.	.	.	.																																																																							.	.	.	.
Alig confidence		.	.	.	.	.	.																																						.	.	.	.	.																													.	.	.	.
Template Conservation																																													.	.	.	.	.
Template Sequence		D	P	L	F	L	A	K	D	F	I	P	V	I	E	K	E	I	A	P	K	L	I	G	R	E	I	T	N	F	K	P	M	A	E	E	F	D	K	M	T	V	N	G	.	.	.	.	.	N	R	L	H	T	A	I	R	Y	G	I	T	Q	A	I	L	D	A	V	A	K	T	R	K	V	T	M	A	E	V	I	R
Template Known Secondary structure			S															T					T	T		B																	T	T	.	.	.	.	.																								T	S
Template Predicted Secondary structure																																													.	.	.	.	.
Template SS confidence
		81	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.						.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.
							108	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.					.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.																																.	.	.	.
Query SS confidence		.	.	.	.	.																																.	.	.	.
Query Sequence		.	.	.	.	.	G	L	V	R	D	K	I	K	A	Y	S	W	V	G	G	D	R	P	A	D	V	I	D	G	I	K	T	L	R	E	I	.	.	.	.	G	F	D	T	F	K	L	N	G	C	E	E	L	G	L	I	D	N	S	R	A	V	D	A	A	V	N	T	V	A	Q	I	R	E	A	F	G	N	Q	I
Query Conservation		.	.	.	.	.																																.	.	.	.
Alig confidence		.	.	.	.	.																																.	.	.	.																		.	.
Template Conservation																																																											.	.
Template Sequence		D	E	Y	N	P	G	A	E	I	N	A	V	P	V	F	A	Q	S	G	D	D	R	Y	D	N	V	D	K	M	I	I	K	E	A	D	V	L	P	H	A	L	I	N	N	V	E	E	K	L	G	L	K	G	E	K	L	L	.	.	E	Y	V	K	W	L	R	D	R	I	I	K	L	R	V	R	E	D	Y	A	P
Template Known Secondary structure					S	T	T													T	T		T	T									T	T		S																T	T	S					.	.															S	S	T	T
Template Predicted Secondary structure																																																											.	.
Template SS confidence
		156	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.			.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.
		179	180	.	.	.							.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.				.	.	210	.	.	.	.	.	.					.	.	.	220	.	.	.	.	.	.						.	.	.	230	.	.	.	.	.	.	.	.	.	240
Predicted Secondary structure							.	.	.	.	.	.																									.	.	.										.	.	.	.											.	.	.	.	.
Query SS confidence							.	.	.	.	.	.																									.	.	.										.	.	.	.											.	.	.	.	.
Query Sequence		E	F	G	L	D	.	.	.	.	.	.	F	H	G	R	V	S	A	P	M	A	K	V	L	I	K	E	L	E	P	Y	R	P	L	F	.	.	.	I	E	E	P	V	L	A	E	Q	.	.	.	.	A	E	Y	Y	P	K	L	A	A	Q	.	.	.	.	.	T	H	I	P	L	A	A	G	E	R	M	F	S	R
Query Conservation							.	.	.	.	.	.																									.	.	.										.	.	.	.											.	.	.	.	.
Alig confidence							.	.	.	.	.	.																									.	.	.										.	.	.	.											.	.	.	.	.
Template Conservation
Template Sequence		I	F	H	I	D	V	Y	G	T	I	G	A	A	F	D	V	D	I	K	A	M	A	D	Y	I	Q	T	L	A	E	A	A	K	P	F	H	L	R	I	E	G	P	M	D	V	E	D	R	Q	K	Q	M	E	A	M	R	D	L	R	A	E	L	D	G	R	G	V	D	A	E	L	V	A	D	E	W	C	N	T	V
Template Known Secondary structure								T	T						T	T	T																	T	T	S							S	B			S	S																			T									T	T			S
Template Predicted Secondary structure
Template SS confidence
		234	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.
		241	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.		.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.
Predicted Secondary structure																																																		.
Query SS confidence																																																		.
Query Sequence		F	D	F	K	R	V	L	E	A	G	G	I	S	I	L	Q	P	D	L	S	H	A	G	G	I	T	E	C	Y	K	I	A	G	M	A	E	A	Y	D	V	T	L	A	P	H	C	P	L	.	G	P	I	A	L	A	A	C	L	H	I	D	F	V	S	Y	N	A	V	L	Q	E	Q	S
Query Conservation																																																		.
Alig confidence																																																		.
Template Conservation
Template Sequence		E	D	V	K	F	F	T	D	N	K	A	G	H	M	V	Q	I	K	T	P	D	L	G	G	V	N	N	I	A	D	A	I	M	Y	C	K	A	N	G	M	G	A	Y	C	G	G	T	N	E	T	N	R	S	A	E	V	T	T	N	I	G	M	A	C	G	A	R	Q	V	L	A	K	P
Template Known Secondary structure										T	T		S	S						T	G	G	G	S	S	T													T	T																										T		S						S
Template Predicted Secondary structure
Template SS confidence
		314	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions