Job Description P30015 Confidence 100.00% Date Wed Jan 25 15:20:48 GMT 2012 Rank 4 Aligned Residues 408 % Identity 23% Template c4a4zA_ PDB info PDB header:hydrolase Chain: A: PDB Molecule:antiviral helicase ski2; PDBTitle: crystal structure of the s. cerevisiae dexh helicase ski2 bound to2 amppnp Resolution 2.40 Å

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		29	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	P	T	A	V	Q	P	Q	T	W	H	V	A	A	R	S	E	H	A	L	V	I	A	P	T	G	S	G	K	T	L	A	A	F	L	Y	A	L	D	R	L	F	R	E	G	G	E	D	T	R	E	A	H	K	R	K	T	S	R	I	L	Y	I	S	P	I	K	A	L	G	T	D	V	Q	R	N	L	Q	I	P
Query Conservation
Alig confidence																																															.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																															.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		E	L	D	T	F	Q	K	E	A	V	Y	H	L	E	Q	G	D	S	V	F	V	A	A	H	T	S	A	G	K	T	V	V	A	E	Y	A	I	A	M	A	H	R	N	M	T	.	.	.	.	.	.	.	.	.	.	.	.	.	K	T	I	Y	T	S	P	I	K	A	L	S	N	Q	K	F	R	D	F	K	E	T
Template Known Secondary structure																T	T									T	T	S		S														T	T		.	.	.	.	.	.	.	.	.	.	.	.	.							S		G	G	G										T	T
Template Predicted Secondary structure																																															.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		329	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.														.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.
		109	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	K	G	I	A	D	E	R	R	R	R	G	E	T	E	V	N	L	R	V	G	I	R	T	G	D	T	P	A	Q	E	R	S	K	L	T	R	N	P	P	D	I	L	I	T	T	P	E	S	L	Y	L	M	L	T	S	R	A	R	E	T	L	R	G	V	E	T	V	I	I	D	E	V	H	A	V	A	G	S	K
Query Conservation
Alig confidence				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.													.	.	.	.	.	.	.																			.
Template Conservation				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.													.	.	.	.	.	.	.																			.
Template Sequence		F	V	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	N	I	G	L	I	T	G	D	V	Q	I	N	.	.	.	.	.	.	.	P	D	A	N	C	L	I	M	T	T	E	I	L	R	S	M	L	Y	.	R	G	A	D	L	I	R	D	V	E	F	V	I	F	D	E	V	H	Y	V	N	D	Q	D
Template Known Secondary structure				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.							S	S					.	.	.	.	.	.	.	T	T	S	S															.		T		S	G	G	G	G									T	T				T	T
Template Predicted Secondary structure				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.													.	.	.	.	.	.	.																			.
Template SS confidence
		396	.																	.	.	400	.	.	.	.	.	.	.	.	.								410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.		.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.
		189	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.			230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.									.	.
Predicted Secondary structure																																											.	.																												.	.	.	.	.	.	.	.
Query SS confidence																																											.	.																												.	.	.	.	.	.	.	.
Query Sequence		R	G	A	H	L	A	L	S	L	E	R	L	D	A	L	L	H	T	S	A	Q	R	I	G	L	S	A	T	V	R	S	A	S	D	V	A	A	F	L	G	G	.	.	D	R	P	V	T	V	V	N	P	P	A	M	R	H	P	Q	I	R	I	V	V	P	V	A	N	M	D	.	.	.	.	.	.	.	.	D	V
Query Conservation																																											.	.																												.	.	.	.	.	.	.	.
Alig confidence														.	.	.	.																										.	.																												.	.	.	.	.	.	.	.
Template Conservation														.	.	.	.
Template Sequence		R	G	V	V	W	E	E	V	I	I	M	L	.	.	.	.	P	Q	H	V	K	F	I	L	L	S	A	T	V	P	N	T	Y	E	F	A	N	W	I	G	R	T	K	Q	K	N	I	Y	V	I	S	T	P	K	R	P	V	P	L	E	I	N	I	W	A	K	K	E	L	I	P	V	I	N	Q	N	S	E	F	L
Template Known Secondary structure		T	T										S	.	.	.	.		T	T											T	T													T									S	S		S	S									T	T								T	T			B
Template Predicted Secondary structure														.	.	.	.
Template SS confidence
		454	.	.	.	.	.	460	.	.	.	.	.					.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.
		259	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.							.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.
Predicted Secondary structure																																																										.	.	.	.	.	.
Query SS confidence																																																										.	.	.	.	.	.
Query Sequence		S	S	V	A	S	G	T	G	E	D	S	H	A	G	R	E	G	S	I	W	P	Y	I	E	T	G	I	L	D	E	V	L	R	H	R	S	T	I	V	F	T	N	S	R	G	L	A	E	K	L	T	A	R	L	N	E	.	.	.	.	.	.	L	Y	A	A	R	L	Q	R	S	P	S	I	A	V	D	A	A	H
Query Conservation																																																										.	.	.	.	.	.
Alig confidence																															.	.																										.	.	.	.	.	.
Template Conservation																															.	.
Template Sequence		E	A	N	F	R	K	H	K	E	I	L	N	D	G	P	S	K	K	T	W	P	E	I	V	N	Y	L	R	K	.	.	R	E	L	L	P	M	V	V	F	V	F	S	K	K	R	C	E	E	Y	A	D	W	L	E	G	I	N	F	C	N	N	K	E	K	S	Q	I	H	M	F	I	E	K	S	I	T	R	L	K
Template Known Secondary structure																		T	T												.	.	T	T			S						S											T	T	T	T																					T	T	S
Template Predicted Secondary structure																															.	.
Template SS confidence
		530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.			.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.
		333	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.									.	400	.	.	.	.
Predicted Secondary structure																																																																				.	.	.	.	.	.	.	.
Query SS confidence																																																																				.	.	.	.	.	.	.	.
Query Sequence		F	E	S	T	S	G	A	T	S	N	R	V	Q	S	S	D	V	F	I	A	R	S	H	H	G	S	V	S	K	E	Q	R	A	I	T	E	Q	A	L	K	S	G	E	L	R	C	V	V	A	T	S	S	L	E	L	G	I	D	M	G	A	V	D	L	V	I	.	.	.	.	.	.	.	.	Q	V	A	T	P	L
Query Conservation																																																																				.	.	.	.	.	.	.	.
Alig confidence																																																																				.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		K	E	D	R	D	L	P	Q	I	L	K	T	R	S	L	L	E	R	G	I	A	V	H	H	G	G	L	L	P	I	V	K	E	L	I	E	I	L	F	S	K	G	F	I	K	V	L	F	A	T	E	T	F	A	M	G	L	N	L	P	T	R	T	V	I	F	S	S	I	R	K	H	D	G	N	G	L	R	E	L
Template Known Secondary structure						T												T	T	T						T	T	S														T	T			S						T					S						S					S		S					T	T
Template Predicted Secondary structure
Template SS confidence
		673	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.	700	.	.	.	.	.	.	.	.	.	710	.	.	.	.	.	.	.	.	.	720	.	.	.	.	.	.	.	.	.	730	.	.	.	.	.	.	.	.	.	740	.	.	.	.	.	.	.	.	.	750	.	.
		405	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	V	A	S	G	L	Q	R	I	G	R	A	G	H	Q	V	G	G	V	S	K	G	L	F	F	P	R	T	R	R	D	L	V	D	S	A	V	I	V	E	C	M	F	A	G	R	L	E	N	L	T	P	P	H	N	P	L	D	V	L	A	Q	Q	T	V	A	A	A	A	M	D	A	L	Q	V	D	E	W	Y	S
Query Conservation
Alig confidence																	.																														.	.	.	.
Template Conservation																	.																														.	.	.	.
Template Sequence		T	P	G	E	F	T	Q	M	A	G	R	A	G	R	R	.	G	L	D	S	T	G	T	V	I	V	M	A	Y	N	S	P	L	S	I	A	T	F	K	E	V	T	M	G	V	.	.	.	.	P	T	R	L	Q	S	Q	F	R	L	T	Y	N	M	I	L	N	L	L	R	I	E	A	L	R	V	E	E	M	I	K
Template Known Secondary structure											G	G	G			T	.	T	T		S	S									S	S													S		.	.	.	.																							T	T
Template Predicted Secondary structure																	.																														.	.	.	.
Template SS confidence
		753	.	.	.	.	.	.	760	.	.	.	.	.	.	.		.	.	770	.	.	.	.	.	.	.	.	.	780	.	.	.	.	.	.	.	.	.	790	.	.	.	.	.	.					.	.	.	800	.	.	.	.	.	.	.	.	.	810	.	.	.	.	.	.	.	.	.	820	.	.	.	.	.	.	.