Job Description P30015 Confidence 100.00% Date Wed Jan 25 15:20:48 GMT 2012 Rank 15 Aligned Residues 374 % Identity 16% Template c3rc8A_ PDB info PDB header:hydrolase/rna Chain: A: PDB Molecule:atp-dependent rna helicase supv3l1, mitochondrial; PDBTitle: human mitochondrial helicase suv3 in complex with short rna fragment Resolution 2.90 Å

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		21	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100
Predicted Secondary structure
Query SS confidence
Query Sequence		D	W	F	L	R	A	F	K	Q	P	T	A	V	Q	P	Q	T	W	H	V	A	A	R	S	E	H	A	L	V	I	A	P	T	G	S	G	K	T	L	A	A	F	L	Y	A	L	D	R	L	F	R	E	G	G	E	D	T	R	E	A	H	K	R	K	T	S	R	I	L	Y	I	S	P	I	K	A	L	G	T	D
Query Conservation
Alig confidence																																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		D	D	L	R	K	I	S	D	L	R	I	P	P	N	W	Y	P	D	A	R	A	M	Q	R	K	I	I	F	H	S	G	P	T	N	S	G	K	T	Y	H	A	I	Q	K	Y	F	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	A	K	S	G	V	Y	C	G	P	L	K	L	L	A	H	E
Template Known Secondary structure								T	B				G	G	G	G						T	S										S	S	S	S	S	T	T										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S	S	S						S	S
Template Predicted Secondary structure																																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		177	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.																		.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.
		101	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Predicted Secondary structure
Query SS confidence
Query Sequence		V	Q	R	N	L	Q	I	P	L	K	G	I	A	D	E	R	R	R	R	G	E	T	E	V	N	L	R	V	G	I	R	T	G	D	T	P	A	Q	E	R	S	K	L	T	R	N	P	P	D	I	L	I	T	T	P	E	S	L	Y	L	M	L	T	S	R	A	R	E	T	L	R	G	V	E	T	V	I	I	D	E
Query Conservation
Alig confidence										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																			.	.															.	.	.	.	.	.	.	.	.
Template Conservation										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																			.	.															.	.	.	.	.	.	.	.	.
Template Sequence		I	F	E	K	S	N	A	A	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	V	P	C	D	L	V	T	G	E	E	R	V	T	V	Q	P	N	.	.	G	K	Q	A	S	H	V	S	C	T	V	E	M	C	.	.	.	.	.	.	.	.	.	S	V	T	T	P	Y	E	V	A	V	I	D	E
Template Known Secondary structure									T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T								S	S						S	S	S	.	.	S				S						G	G	G		.	.	.	.	.	.	.	.	.		S	S	S
Template Predicted Secondary structure										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																			.	.															.	.	.	.	.	.	.	.	.
Template SS confidence
		240	.	.	.	.	.	.	.																	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.			.	.	.	.	270	.	.	.	.	.	.	.	.	.										280	.	.	.	.	.	.	.	.	.	290	.	.
		181	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260
Predicted Secondary structure
Query SS confidence
Query Sequence		V	H	A	V	A	G	S	K	R	G	A	H	L	A	L	S	L	E	R	L	D	A	L	L	H	T	S	A	Q	R	I	G	L	S	A	T	V	R	S	A	S	D	V	A	A	F	L	G	G	D	R	P	V	T	V	V	N	P	P	A	M	R	H	P	Q	I	R	I	V	V	P	V	A	N	M	D	D	V	S	S
Query Conservation
Alig confidence																						.	.	.																																																					.	.	.	.	.
Template Conservation																						.	.	.																																																					.	.	.	.	.
Template Sequence		I	Q	M	I	R	D	P	A	R	G	W	A	W	T	R	A	L	L	G	L	.	.	.	C	A	E	E	V	H	L	C	G	E	P	A	A	I	D	L	V	M	E	L	M	Y	T	T	G	E	E	V	E	V	R	D	Y	K	R	L	T	P	I	S	V	L	D	H	A	L	E	S	L	D	N	L	.	.	.	.	.
Template Known Secondary structure		G	G	G	G	G		T	T	T												.	.	.											G	G	G												T											S	S						S	S				S	S	T	T		.	.	.	.	.
Template Predicted Secondary structure																						.	.	.																																																					.	.	.	.	.
Template SS confidence
		293	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.				.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.
		261	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340
Predicted Secondary structure
Query SS confidence
Query Sequence		V	A	S	G	T	G	E	D	S	H	A	G	R	E	G	S	I	W	P	Y	I	E	T	G	I	L	D	E	V	L	R	H	R	S	T	I	V	F	T	N	S	R	G	L	A	E	K	L	T	A	R	L	N	E	L	Y	A	A	R	L	Q	R	S	P	S	I	A	V	D	A	A	H	F	E	S	T	S	G	A	T
Query Conservation
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	R	P	G	D	C	I	V	C	F	S	K	N	D	I	Y	S	V	S	R	Q	I	E	I	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.		T	T						S	S														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
																																	365	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.
		341	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.			.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.				.	.	.	.	.	.	.	410	.	.	.	.	.
Predicted Secondary structure																																	.	.																																.	.	.
Query SS confidence																																	.	.																																.	.	.
Query Sequence		S	N	R	V	Q	S	S	D	V	F	I	A	R	S	H	H	G	S	V	S	K	E	Q	R	A	I	T	E	Q	A	L	.	.	K	S	G	E	L	R	C	V	V	A	T	S	S	L	E	L	G	I	D	M	G	A	V	D	L	V	I	Q	V	A	T	.	.	.	P	L	S	V	A	S	G	L	Q	R	I	G	R
Query Conservation																																	.	.																																.	.	.
Alig confidence		.	.	.	.	.	.	.																									.	.																						.										.	.	.
Template Conservation		.	.	.	.	.	.	.																																																.
Template Sequence		.	.	.	.	.	.	.	R	G	L	E	S	A	V	I	Y	G	S	L	P	P	G	T	K	L	A	Q	A	K	K	F	N	D	P	N	D	P	C	K	I	L	V	A	T	D	A	I	G	M	G	L	N	L	S	.	I	R	R	I	I	F	Y	S	L	I	K	E	P	I	T	T	S	Q	A	L	Q	I	A	G	R
Template Known Secondary structure		.	.	.	.	.	.	.	T	T								T	T	S															T	T		S								G	G	G	G	S	S					.	B	S					S		S	B			B											T	T
Template Predicted Secondary structure		.	.	.	.	.	.	.																																																.
Template SS confidence
									388	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.		.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.
		416	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.		.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.
Predicted Secondary structure																																																													.
Query SS confidence																																																													.
Query Sequence		A	G	H	Q	V	G	G	V	S	K	G	L	F	F	P	R	T	R	R	D	L	V	D	S	A	V	I	V	E	C	M	F	A	G	R	L	E	N	L	T	P	P	H	N	P	L	D	V	L	A	Q	Q	T	V	A	A	A	A	M	.	D	A	L	Q	V	D	E	W	Y	S	R	V	R	R	A	A	P	W	K	D
Query Conservation																																																													.
Alig confidence																						.	.	.	.															.	.																				.
Template Conservation																						.	.	.	.															.	.
Template Sequence		A	G	R	F	S	S	R	F	K	E	G	E	V	T	T	M	N	H	E	D	.	.	.	.	L	S	L	L	K	E	I	L	K	R	P	V	D	P	.	.	I	R	A	A	G	L	H	P	T	A	E	Q	I	E	M	F	A	Y	H	L	P	D	A	T	L	S	N	L	I	D	I	F	V	D	F	S	Q	V	D	G
Template Known Secondary structure		B				T	T	T			S						S	S				.	.	.	.									T	S					.	.																					T	T	S														B			T
Template Predicted Secondary structure																						.	.	.	.															.	.
Template SS confidence
		471	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490					.	.	.	.	.	.	.	.	.	500	.	.	.	.			.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.
		495					.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.
Predicted Secondary structure			.	.	.	.
Query SS confidence			.	.	.	.
Query Sequence		L	.	.	.	.	P	R	R	V	F	D	A	T	L	D	M	L	S	G	R	Y	P	S	G	D	F	S
Query Conservation			.	.	.	.
Alig confidence			.	.	.	.
Template Conservation
Template Sequence		Q	Y	F	V	C	N	M	D	D	F	K	F	S	A	E	L	I	Q	H	I	P	L	S	L	R	V	R
Template Known Secondary structure		T																T	T	T	S
Template Predicted Secondary structure
Template SS confidence
		545	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.