Job Description P30015 Confidence 99.94% Date Wed Jan 25 15:20:48 GMT 2012 Rank 79 Aligned Residues 186 % Identity 20% Template c3llmB_ PDB info PDB header:hydrolase Chain: B: PDB Molecule:atp-dependent rna helicase a; PDBTitle: crystal structure analysis of a rna helicase Resolution 2.80 Å

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		16	.	.	.	20	.	.	.	.	.	.	.	.	.	30		.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.
Predicted Secondary structure																	.
Query SS confidence																	.
Query Sequence		S	P	A	T	R	D	W	F	L	R	A	F	K	Q	P	.	T	A	V	Q	P	Q	T	W	H	V	A	A	R	S	E	H	A	L	V	I	A	P	T	G	S	G	K	T	L	A	A	F	L	Y	A	L	D	R	L	F	R	E	G	G	E	D	T	R	E	A	H	K	R	K	T	S	R	I	L	Y	I	S	P	I
Query Conservation																	.
Alig confidence																	.																																											.	.	.	.	.	.	.	.
Template Conservation																																																												.	.	.	.	.	.	.	.
Template Sequence		D	H	D	L	Q	A	I	L	Q	E	R	E	L	L	P	V	K	K	F	E	S	E	I	L	E	A	I	S	Q	N	S	V	V	I	I	R	G	A	T	G	C	G	K	T	T	Q	V	P	Q	F	I	L	D	D	F	I	Q	N	.	.	.	.	.	.	.	.	D	R	A	A	E	C	N	I	V	V	T	Q	P	R
Template Known Secondary structure														T	S	G	G	G	G	G												S								T	T	S	S																T	.	.	.	.	.	.	.	.	T		G	G	G								S	S
Template Predicted Secondary structure																																																												.	.	.	.	.	.	.	.
Template SS confidence
		375	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.									.	.	.	.	.	.	.	440	.	.	.	.	.	.
		95	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	A	L	G	T	D	V	Q	R	N	L	Q	I	P	L	K	G	I	A	D	E	R	R	R	R	G	E	T	E	V	N	L	R	V	G	I	R	T	G	D	T	P	A	Q	E	R	S	K	L	T	R	N	P	P	D	I	L	I	T	T	P	E	S	L	Y	L	M	L	T	S	R	A	R	E	T	L	R	G	V	E
Query Conservation
Alig confidence																		.	.	.	.	.	.	.	.	.	.															.	.	.	.	.	.																									.	.	.	.
Template Conservation																		.	.	.	.	.	.	.	.	.	.															.	.	.	.	.	.																									.	.	.	.
Template Sequence		R	I	S	A	V	S	V	A	E	R	V	A	F	E	R	G	.	.	.	.	.	.	.	.	.	.	E	E	P	G	K	S	C	G	Y	S	V	R	F	E	.	.	.	.	.	.	S	I	L	P	R	P	H	A	S	I	X	F	C	T	V	G	V	L	L	R	K	L	E	A	.	.	.	.	G	I	R	G	I	S
Template Known Secondary structure															T	T	T	.	.	.	.	.	.	.	.	.	.			T	T	S	S						T	T		.	.	.	.	.	.						S	S	S																	.	.	.	.			T	T
Template Predicted Secondary structure																		.	.	.	.	.	.	.	.	.	.															.	.	.	.	.	.																									.	.	.	.
Template SS confidence
		447	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.											.	.	.	.	.	.	.	470	.	.	.	.	.	.							.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500					.	.	.	.	.	.
		175	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.			.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.
Predicted Secondary structure																																	.	.
Query SS confidence																																	.	.
Query Sequence		T	V	I	I	D	E	V	H	A	V	A	G	S	K	R	G	A	H	L	A	L	S	L	E	R	L	D	A	L	L	H	.	.	T	S	A	Q	R	I	G	L	S	A	T	V	R	S	A	S	D	V	A	A	F	L	G	G	D	R	P	V	T	V
Query Conservation																																	.	.
Alig confidence										.	.	.	.	.																			.	.													.
Template Conservation										.	.	.	.	.																																	.
Template Sequence		H	V	I	V	D	E	I	H	.	.	.	.	.	E	R	D	I	N	T	D	F	L	L	V	V	L	R	D	V	V	Q	A	Y	P	E	V	R	I	V	L	X	S	A	T	I	.	D	T	S	X	F	C	E	Y	F	F	N	C	P	I	I	E	V
Template Known Secondary structure								T	T	.	.	.	.	.	S																				T	T	S							S	S	S	.									T	T	S
Template Predicted Secondary structure										.	.	.	.	.																																	.
Template SS confidence
		507	.	.	510	.	.	.	.						.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.		.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions