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Job DescriptionP30015
Confidence99.96%DateWed Jan 25 15:20:48 GMT 2012
Rank64Aligned Residues187
% Identity22%Templatec3iuyB_
PDB info PDB header:hydrolaseChain: B: PDB Molecule:probable atp-dependent rna helicase ddx53; PDBTitle: crystal structure of ddx53 dead-box domain
Resolution2.40 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   5....10. ........20.........30.........40.........50.........60.........70.........80.
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Query Sequence  PDPSSLL. . . PDVFSPATRDWFLRAFKQPTAVQPQTWHVAARSEHALVIAPTGSGKTLAAFLYALDRLFREGGEDTREAH
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Template Sequence  PKPTCRFKDAFQQYPDLLKSIIRVGILKPTPIQSQAWPIILQGIDLIVVAQTGTGKTLSYLMPGFIHL. . . . . . . . . . . .
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   226...230.........240.........250.........260.........270.........280.........290...
 
   82.......90.........100.........110.........120.........130.........140.........150.........160.
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Query Sequence  KRKTSRILYISPIKALGTDVQRNLQIPLKGIADERRRRGETEVNLRVGIRTGDTPAQERSKLTRNPPDILITTPESLYLM
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Template Sequence  DSNGPGMLVLTPTRELALHVEAECSKYSYK. . . . . . . . . . . . . GLKSICIYGV. . . . . . . . . . . . . . DIIIATPGRLNDL
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   294.....300.........310.........320... ......330... ......340......
 
   162.......170.........180.........190.........200.........210......... 220.........230.....
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Query Sequence  LTSRARETLRGVETVIIDEVHAVAGSKRGAHLALSLERLDALLHTSAQRIGLSATVRS. . ASDVAAFLGGDRPVTV
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Template Sequence  QM. NNSVNLRSITYLVIDEADKMLDMEFEPQIRKILLDV. . . . RPDRQTVMTSATWPDTVRQLALSYLKDPMIVYV
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   369370 .........380.........390.........400...... ...410.........420.........430.........
 
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No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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