Job Description P30015 Confidence 100.00% Date Wed Jan 25 15:20:48 GMT 2012 Rank 51 Aligned Residues 319 % Identity 20% Template c3h1tA_ PDB info PDB header:hydrolase Chain: A: PDB Molecule:type i site-specific restriction-modification PDBTitle: the fragment structure of a putative hsdr subunit of a type2 i restriction enzyme from vibrio vulnificus yj016 Resolution 2.30 Å

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		30	.	.	.	.	.	.	.	.	.	40	.	.	.	.						.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.
Predicted Secondary structure																	.	.	.	.	.
Query SS confidence																	.	.	.	.	.
Query Sequence		P	T	A	V	Q	P	Q	T	W	H	V	A	A	R	S	.	.	.	.	.	E	H	A	L	V	I	A	P	T	G	S	G	K	T	L	A	A	F	L	Y	A	L	D	R	L	F	R	E	G	G	E	D	T	R	E	A	H	K	R	K	T	S	R	I	L	Y	I	S	P	I	K	A	L	G	T	D	V	Q	R	N
Query Conservation																	.	.	.	.	.
Alig confidence																	.	.	.	.	.																																							.	.	.	.
Template Conservation																																																												.	.	.	.
Template Sequence		P	R	Y	Y	Q	Q	I	A	I	N	R	A	V	Q	S	V	L	Q	G	K	K	R	S	L	I	T	X	A	T	G	T	G	K	T	V	V	A	F	Q	I	S	W	K	L	W	S	A	R	W	N	R	T	G	D	Y	R	K	P	.	.	.	.	R	I	L	F	L	A	D	T	F	T	P	F	G	D	A	R	H	K
Template Known Secondary structure																			T	T		S								T	T	S																T	T			S	S		S	S	S			.	.	.	.										T	T	T		S	S
Template Predicted Secondary structure																																																												.	.	.	.
Template SS confidence
		179	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.					.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.
		105	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	Q	I	P	L	K	G	I	A	D	E	R	R	R	R	G	E	T	E	V	N	L	R	V	G	I	R	T	G	D	T	P	A	Q	E	R	S	K	L	T	R	N	P	P	D	I	L	I	T	T	P	E	S	L	Y	L	M	L	T	S	R	A	R	E	T	L	R	G	V	E	T	V	I	I	D	E	V	H	A	V
Query Conservation
Alig confidence										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																	.	.	.																	.
Template Conservation										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																	.	.	.																	.
Template Sequence		I	E	G	V	V	K	S	R	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	E	I	Y	F	A	I	Y	Q	S	I	P	G	L	Y	K	E	.	.	.	F	P	Q	D	F	F	D	L	I	I	I	D	E	C	H	W	.
Template Known Secondary structure							S	S		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S						G	G	G				G	G	G	G	.	.	.	S		T	T	S		S					S					.
Template Predicted Secondary structure										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																	.	.	.																	.
Template SS confidence
		266	.	.	.	270	.	.	.																																					.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.				290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.
		185	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	G	S	K	R	G	A	H	L	A	L	S	L	E	R	L	D	A	L	L	H	T	S	A	Q	R	I	G	L	S	A	T	V	R	S	A	S	D	V	A	A	F	L	G	G	D	R	P	V	T	V	V	N	P	P	A	M	R	H	P	Q	I	R	I	V	V	P	V	A	N	M	D	D	V	S	S	V	A	S	G
Query Conservation
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.									.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.									.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	R	E	I	L	E	Y	F	E	.	P	A	F	Q	I	G	X	T	A	T	P	L	R	E	D	N	R	D	T	Y	R	Y	F	G	N	P	I	Y	T	Y	S	L	R	Q	G	I	D	D	G	F	L	A	P	Y	R	V	H	R	V	I	S	E	V	D	A	T	K	D
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.							S	T	.	T	S							S	S		S		T	T	T							S		S		S												T	S	S											T	T					S
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.									.
Template SS confidence
															323	.	.	.	.	.	.	330		.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.
		265	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	G	E	D	S	H	A	G	R	E	G	S	I	W	P	Y	I	E	T	G	I	L	D	E	V	L	R	H	R	S	T	I	V	F	T	N	S	R	G	L	A	E	K	L	T	A	R	L	N	E	L	Y	A	A	R	L	Q	R	S	P	S	I	A	V	D	A	A	H	F	E	S	T	S	G	A	T	S	N	R	V
Query Conservation
Alig confidence																																																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		F	E	R	V	I	A	L	K	A	R	T	D	A	F	A	K	H	L	T	D	F	X	K	R	T	D	R	F	A	K	T	I	V	F	C	V	D	Q	E	H	A	D	E	X	R	R	A	L	N	N	L	N	S	D	L	S	R	K	H	P	D	Y	V	A	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure											T																	T	T	S							S	S															T					T	T		T	T	S			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		412	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.
		345	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.			.
Predicted Secondary structure																																																																															.	.
Query SS confidence																																																																															.	.
Query Sequence		Q	S	S	D	V	F	I	A	R	S	H	H	G	S	V	S	K	E	Q	R	A	I	T	E	Q	A	L	K	S	G	E	L	R	C	V	V	A	T	S	S	L	E	L	G	I	D	M	G	A	V	D	L	V	I	Q	V	A	T	P	L	S	V	A	S	G	L	Q	R	I	G	R	A	G	H	Q	V	G	.	.	G
Query Conservation																																																																															.	.
Alig confidence		.	.	.	.	.	.	.																																																																							.	.
Template Conservation		.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	R	V	T	S	E	E	G	K	I	G	K	G	H	L	S	R	F	Q	E	L	E	T	S	T	P	V	I	L	T	T	S	Q	L	L	T	T	G	V	D	A	P	T	C	K	N	V	V	L	A	R	V	V	N	S	X	S	E	F	K	Q	I	V	G	R	G	T	R	L	R	E	D	Y	G
Template Known Secondary structure		.	.	.	.	.	.	.			S	S	T	T														T	T										S	S	T	T	T	T	T				T	T								S													T	T	S				B	G	G	G	T
Template Predicted Secondary structure		.	.	.	.	.	.	.
Template SS confidence
									476	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.
		423	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	S	K	G	L	F	F
Query Conservation
Alig confidence
Template Conservation
Template Sequence		K	L	W	F	N	I	I
Template Known Secondary structure		B	S
Template Predicted Secondary structure
Template SS confidence
		549	550	.	.	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions