Job Description P30015 Confidence 99.96% Date Wed Jan 25 15:20:48 GMT 2012 Rank 65 Aligned Residues 395 % Identity 17% Template c3dmqA_ PDB info PDB header:hydrolase Chain: A: PDB Molecule:rna polymerase-associated protein rapa; PDBTitle: crystal structure of rapa, a swi2/snf2 protein that2 recycles rna polymerase during transcription Resolution 3.20 Å

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		29	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.			.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.
Predicted Secondary structure																				.	.
Query SS confidence																				.	.
Query Sequence		Q	P	T	A	V	Q	P	Q	T	W	H	V	A	A	R	S	E	H	.	.	A	L	V	I	A	P	T	G	S	G	K	T	L	A	A	F	L	Y	A	L	D	R	L	F	R	E	G	G	E	D	T	R	E	A	H	K	R	K	T	S	R	I	L	Y	I	S	P	I	K	A	L	G	T	D	V	Q	R	N	L	Q
Query Conservation																				.	.
Alig confidence																				.	.																														.	.	.	.	.	.	.	.	.	.	.										.
Template Conservation																																																			.	.	.	.	.	.	.	.	.	.	.										.
Template Sequence		S	L	I	P	H	Q	L	N	I	A	H	D	V	G	R	R	H	A	P	R	V	L	L	A	D	E	V	G	L	G	K	T	I	E	A	G	X	I	L	H	Q	Q	L	L	S	G	A	A	E	.	.	.	.	.	.	.	.	.	.	.	R	V	L	I	I	V	P	E	T	.	L	Q	H	Q	W	L	V	E	X	L
Template Known Secondary structure																	S	S	S									T	T	S																T	S	S			.	.	.	.	.	.	.	.	.	.	.								T	T	.	T
Template Predicted Secondary structure																																																			.	.	.	.	.	.	.	.	.	.	.										.
Template SS confidence
		153	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.												.	.	.	.	.	.	.	.	210		.	.	.	.	.	.	.	.	.	220
		107	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.			.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.
Predicted Secondary structure																																									.	.
Query SS confidence																																									.	.
Query Sequence		I	P	L	K	G	I	A	D	E	R	R	R	R	G	E	T	E	V	N	L	R	V	G	I	R	T	G	D	T	P	A	Q	E	R	S	K	L	T	R	.	.	N	P	P	D	I	L	I	T	T	P	E	S	L	Y	L	M	L	T	S	R	A	R	E	T	L	R	G	V	E	T	V	I	I	D	E	V	H	A	V
Query Conservation																																									.	.
Alig confidence					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																						.	.
Template Conservation					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		R	R	F	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	N	L	R	F	A	L	F	D	D	E	R	Y	A	E	A	Q	H	D	A	Y	N	P	F	D	T	E	Q	L	V	I	C	S	L	D	F	A	R	R	S	K	Q	R	L	E	H	L	C	E	A	E	W	D	L	L	V	V	D	E	A	H	H	L
Template Known Secondary structure				S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																		T	T		S	S	S	T	T		S											T	S	T	T	T	T					T	S										S	S
Template Predicted Secondary structure					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		221	.	.																.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.
		185	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.						.	.	220	.	.	.	.	.	.	.	.	.	230	.
Predicted Secondary structure																																			.	.	.	.	.															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																			.	.	.	.	.															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		A	G	S	K	R	G	A	H	L	A	L	S	L	E	R	L	D	A	L	L	H	T	S	A	Q	R	I	G	L	S	A	T	V	.	.	.	.	.	R	S	A	S	D	V	A	A	F	L	G	G	D	R	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																																			.	.	.	.	.															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence						.	.																												.	.	.	.	.															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation						.	.
Template Sequence		V	W	S	E	.	.	D	A	P	S	R	E	Y	Q	A	I	E	Q	L	A	E	H	V	P	G	V	L	L	L	T	A	T	P	E	Q	L	G	X	E	S	H	F	A	R	L	R	L	L	D	P	N	R	F	H	D	F	A	Q	F	V	E	E	Q	K	N	Y	C	P	V	A	D	A	V	A	X	L	L	A	G	N
Template Known Secondary structure				B	T	.	.	T	B													T	T		S	S				S		S	S		S	S	S		S	S		T									T	T	T		S	S	T																			T	T	T	T	S
Template Predicted Secondary structure						.	.
Template SS confidence
		286	.	.	.			290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.
															232	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.																																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.																																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	P	V	T	V	V	N	P	P	A	M	R	H	P	Q	I	R	I	V	V	P	V	A	N	M	D	D	V	S	S	V	A	S	G	T	G	E	D	S	H	A	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.																																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.																																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		K	L	S	N	D	E	L	N	X	L	G	E	X	I	G	E	Q	D	I	E	P	L	L	Q	A	A	N	S	D	S	E	D	A	Q	S	A	R	Q	E	L	V	S	X	L	X	D	R	H	G	T	S	R	V	L	F	R	N	T	R	N	G	V	K	G	F	P	K	R	E	L	H	T	I	K	L	P	L	P	T	Q
Template Known Secondary structure					G	G	G	T	T	S	S	T	T	T	T		T	T		S	S	T	T	G	G	G	T				S	S		S	T	T	T									G	G	G		T	T	T	T	T						T	T	T
Template Predicted Secondary structure
Template SS confidence
		364	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.
																																												273	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	R	E	G	S	I	W	P	Y	I	E	T	G	I	L	D	E	V	L	R	H	R	S	T	I	V	F	T	N	S	R	G	L	A	E	K	L	T	A
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																	.	.
Template Conservation																																																												.	.
Template Sequence		Y	Q	T	A	I	K	V	S	G	I	X	G	A	R	K	S	A	E	D	R	A	R	D	X	L	Y	P	E	R	I	Y	Q	E	F	E	G	D	N	A	T	W	W	N	F	D	P	R	V	E	W	L	X	G	Y	L	T	S	H	.	.	R	S	Q	K	V	L	V	I	C	A	K	A	A	T	A	L	Q	L	E	Q
Template Known Secondary structure												T	T			S	S	G	G	G	G	T						S	G	G	G	T	T	T	T	T	S	S	S			T	T	T	T	S													T	.	.	S	S	S							S	S	T
Template Predicted Secondary structure																																																												.	.
Template SS confidence
		444	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.			.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.
		311	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.			.	.	.	.	380	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																																			.	.
Query SS confidence																																																																			.	.
Query Sequence		R	L	N	E	L	Y	A	A	R	L	Q	R	S	P	S	I	A	V	D	A	A	H	F	E	S	T	S	G	A	T	S	N	R	V	Q	S	S	D	V	F	I	A	R	S	H	H	G	S	V	S	K	E	Q	R	A	I	T	E	Q	A	L	K	S	G	E	.	.	L	R	C	V	V	A	T	S	S	L	E	L	G
Query Conservation																																																																			.	.
Alig confidence						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																														.	.
Template Conservation						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		V	L	R	E	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	R	E	G	I	R	A	A	V	F	H	E	G	X	S	I	I	E	R	D	R	A	A	A	W	F	A	E	E	D	T	G	A	Q	V	L	L	C	S	E	I	G	S	E	G
Template Known Secondary structure					T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T	T									T	T	S		T	T											S	T	T	S	S							S			T	T		S
Template Predicted Secondary structure						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		522	.	.	.																																	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.
		389	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.		.	450	.	.	.	.	.	.		.	.	.	460	.	.	.	.	.	.
Predicted Secondary structure																																																														.									.
Query SS confidence																																																														.									.
Query Sequence		I	D	M	G	A	V	D	L	V	I	Q	V	A	T	P	L	S	V	A	S	G	L	Q	R	I	G	R	A	G	H	Q	V	G	G	V	S	K	G	L	F	F	P	R	T	R	R	D	L	V	D	S	A	V	I	V	E	C	M	F	A	.	G	R	L	E	N	L	T	P	.	P	H	N	P	L	D	V	L	A	Q
Query Conservation																																																														.									.
Alig confidence																																	.																													.									.
Template Conservation																																	.
Template Sequence		R	N	F	Q	F	A	S	H	X	V	X	F	D	L	P	F	N	P	D	L	L	E	Q	R	I	G	R	L	D	R	I	.	G	Q	A	H	D	I	Q	I	H	V	P	Y	L	E	K	T	A	Q	S	V	L	V	R	W	Y	H	E	G	L	D	A	F	E	H	T	C	P	T	G	R	T	I	Y	D	S	V	Y	N
Template Known Secondary structure		S			T	T							S	S			S	S										T	T	S		S	.	S	S		S										T	T	S												T	T			S	S	S			S	S
Template Predicted Secondary structure																																	.
Template SS confidence
		570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600		.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.
		467	.	.	470	.	.	.	.			.	.	.	.	.	480	.	.	.	.	.	.	.
Predicted Secondary structure										.	.
Query SS confidence										.	.
Query Sequence		Q	T	V	A	A	A	A	M	.	.	D	A	L	Q	V	D	E	W	Y	S	R	V	R
Query Conservation										.	.
Alig confidence										.	.
Template Conservation
Template Sequence		D	L	I	N	Y	L	A	S	P	D	Q	T	E	G	F	D	D	L	I	K	N	C	R
Template Known Secondary structure											S			T	T
Template Predicted Secondary structure
Template SS confidence
		649	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.