Job Description P30015 Confidence 100.00% Date Wed Jan 25 15:20:48 GMT 2012 Rank 49 Aligned Residues 210 % Identity 28% Template c3dkpA_ PDB info PDB header:hydrolase Chain: A: PDB Molecule:probable atp-dependent rna helicase ddx52; PDBTitle: human dead-box rna-helicase ddx52, conserved domain i in complex with2 adp Resolution 2.10 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		3	.	.	.	.	.	.	10	.	.	.	.						.	.	.	.	.	20	.	.	.		.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.
Predicted Secondary structure														.	.	.	.	.										.
Query SS confidence														.	.	.	.	.										.
Query Sequence		D	N	P	D	P	S	S	L	L	P	D	V	.	.	.	.	.	F	S	P	A	T	R	D	W	F	.	L	R	A	F	K	Q	P	T	A	V	Q	P	Q	T	W	H	V	A	A	R	S	E	H	A	L	V	I	A	P	T	G	S	G	K	T	L	A	A	F	L	Y	A	L	D	R	L	F	R	E	G	G	E	D
Query Conservation														.	.	.	.	.										.
Alig confidence														.	.	.	.	.										.																																																	.	.	.	.	.
Template Conservation																																																																													.	.	.	.	.
Template Sequence		D	L	P	D	P	I	A	T	F	Q	Q	L	D	Q	E	Y	K	I	N	S	R	L	L	Q	N	I	L	D	A	G	F	Q	M	P	T	P	I	Q	M	Q	A	I	P	V	M	L	H	G	R	E	L	L	A	S	A	P	T	G	S	G	K	T	L	A	F	S	I	P	I	L	M	Q	L	K	Q	.	.	.	.	.
Template Known Secondary structure		S						S	S																					T	T			S														T	T									T	T	S																S	.	.	.	.	.
Template Predicted Secondary structure																																																																													.	.	.	.	.
Template SS confidence
		155	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.
		77	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.		.	.	.	.	150	.	.	.	.	.
Predicted Secondary structure																																																																							.
Query SS confidence																																																																							.
Query Sequence		T	R	E	A	H	K	R	K	T	S	R	I	L	Y	I	S	P	I	K	A	L	G	T	D	V	Q	R	N	L	Q	I	P	L	K	G	I	A	D	E	R	R	R	R	G	E	T	E	V	N	L	R	V	G	I	R	T	G	D	T	P	A	Q	E	R	S	K	L	T	R	.	N	P	P	D	I	L	I	T	T	P
Query Conservation																																																																							.
Alig confidence		.	.	.	.																																	.	.	.	.	.	.	.	.	.	.	.	.																						.
Template Conservation		.	.	.	.																																	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	P	A	N	K	G	F	R	A	L	I	I	S	P	T	R	E	L	A	S	Q	I	H	R	E	L	I	K	I	S	E	G	T	.	.	.	.	.	.	.	.	.	.	.	.	G	F	R	I	H	M	I	H	K	A	A	V	A	A	K	K	F	G	P	K	S	S	K	K	F	D	I	L	V	T	T	P
Template Known Secondary structure		.	.	.	.			S	S	S								S	S															T	T	T	S	.	.	.	.	.	.	.	.	.	.	.	.															T	T	T	S	T	T	S
Template Predicted Secondary structure		.	.	.	.																																	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
						230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.													.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.
		156	.	.	.	160	.	.	.	.		.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.		.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.
Predicted Secondary structure											.																							.
Query SS confidence											.																							.
Query Sequence		E	S	L	Y	L	M	L	T	S	.	R	A	R	E	T	L	R	G	V	E	T	V	I	I	D	E	V	H	A	V	A	G	.	S	K	R	G	A	H	L	A	L	S	L	E	R	L	D	A	L	L	H	T	S	A	Q	R	I	G	L	S	A	T	V	R	S	A	S	D	V	A	A	F	L	G	G	D	R	P	V
Query Conservation											.																							.
Alig confidence											.																							.															.	.	.
Template Conservation																																																	.	.	.
Template Sequence		N	R	L	I	Y	L	L	K	Q	D	P	P	G	I	D	L	A	S	V	E	W	L	V	V	D	E	S	D	K	L	F	E	D	G	G	F	R	D	Q	L	A	S	I	F	L	A	C	.	.	.	T	S	H	K	V	R	R	A	M	F	S	A	T	F	A	Y	D	V	E	Q	W	C	K	L	N	L	D	N	V	I
Template Known Secondary structure										S	S	S		S				T	T							S	S																						.	.	.			T	T								S	S													S	S	S
Template Predicted Secondary structure																																																	.	.	.
Template SS confidence
		294	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340				.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370
		234	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	V	V
Query Conservation
Alig confidence
Template Conservation
Template Sequence		S	V	S
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		373	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions