Job Description P30015 Confidence 99.97% Date Wed Jan 25 15:20:48 GMT 2012 Rank 56 Aligned Residues 360 % Identity 15% Template c2w74B_ PDB info PDB header:hydrolase Chain: B: PDB Molecule:type i restriction enzyme ecor124ii r protein; PDBTitle: mutant (k220r) of the hsdr subunit of the ecor124i2 restriction enzyme in complex with atp Resolution 2.74 Å

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		30	.	.	.	.	.	.	.	.	.	40	.	.	.															.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.
Predicted Secondary structure																.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		P	T	A	V	Q	P	Q	T	W	H	V	A	A	R	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S	E	H	A	L	V	I	A	P	T	G	S	G	K	T	L	A	A	F	L	Y	A	L	D	R	L	F	R	E	G	G	E	D	T	R	E	A	H	K	R	K	T	S	R	I	L	Y	I	S	P	I	K
Query Conservation																.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																.	.	.	.	.	.	.	.	.	.	.	.	.	.																											.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																								.	.	.	.	.	.	.	.	.	.	.
Template Sequence		M	R	P	Y	Q	I	A	A	T	E	R	I	L	W	K	I	K	S	S	F	T	A	K	N	W	S	K	P	E	S	G	G	Y	I	W	H	T	T	G	S	G	K	T	L	T	S	F	K	A	A	R	L	A	T	.	.	.	.	.	.	.	.	.	.	.	E	L	D	F	I	D	K	V	F	F	V	V	D	R	K
Template Known Secondary structure																							T	T			S	S	G	G	G	S							T	T	S	S													T	.	.	.	.	.	.	.	.	.	.	.	T		T	T										G	G
Template Predicted Secondary structure																																																								.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		272	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.												.	.	.	.	330	.	.	.	.	.	.	.	.	.	340
		96	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.		.	.	.	.	.	170	.	.	.	.
Predicted Secondary structure																																																																							.
Query SS confidence																																																																							.
Query Sequence		A	L	G	T	D	V	Q	R	N	L	Q	I	P	L	K	G	I	A	D	E	R	R	R	R	G	E	T	E	V	N	L	R	V	G	I	R	T	G	D	T	P	A	Q	E	R	S	K	L	T	R	N	P	P	D	I	L	I	T	T	P	E	S	L	Y	L	M	L	T	S	.	R	A	R	E	T	L	R	G	V	E
Query Conservation																																																																							.
Alig confidence																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																	.
Template Conservation																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		D	L	D	Y	Q	T	M	K	E	Y	Q	R	F	S	P	D	S	V	N	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S	E	N	T	A	G	L	K	R	N	L	D	K	D	D	N	K	I	I	V	T	T	I	Q	K	L	N	N	L	M	K	A	E	S	D	L	P	V	Y	N	Q	Q	V
Template Known Secondary structure		G											T	T	S	T	T			S	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S										T	T		T	T																			S			G	G	G	G	S
Template Predicted Secondary structure																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		341	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360																		.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.
		175	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.							.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																		.	.	.	.	.	.
Query SS confidence																																																		.	.	.	.	.	.
Query Sequence		T	V	I	I	D	E	V	H	A	V	A	G	S	K	R	G	A	H	L	A	L	S	L	E	R	L	D	A	L	L	H	T	S	A	Q	R	I	G	L	S	A	T	V	R	S	A	S	D	.	.	.	.	.	.	V	A	A	F	L	G	G	D	R	P	V	T	V	V	N	P	P	A	M	R	H	P	Q	I	R	I
Query Conservation																																																		.	.	.	.	.	.
Alig confidence										.	.	.	.	.	.	.																	.																	.	.	.	.	.	.							.	.	.
Template Conservation										.	.	.	.	.	.	.																	.																													.	.	.
Template Sequence		V	F	I	F	D	E	C	H	.	.	.	.	.	.	.	R	S	Q	F	G	E	A	Q	K	N	L	K	K	K	F	K	.	R	Y	Y	Q	F	G	F	T	G	T	P	I	F	P	E	N	A	L	G	S	E	T	T	A	S	V	F	G	.	.	.	R	E	L	H	S	Y	V	I	T	D	A	I	R	D	E	K	V
Template Known Secondary structure							S			.	.	.	.	.	.	.																S	.									S	S				G	G	G		T	T	S									.	.	.	S													T	T	S	S
Template Predicted Secondary structure										.	.	.	.	.	.	.																	.																													.	.	.
Template SS confidence
		404	.	.	.	.	.	410	.								.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.		.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.				.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.
		249	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.			.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.		.	.	.	.
Predicted Secondary structure																																															.	.																													.
Query SS confidence																																															.	.																													.
Query Sequence		V	V	P	V	A	N	M	D	D	V	S	S	V	A	S	G	T	G	E	D	S	H	A	G	R	E	G	S	I	W	P	Y	I	E	T	G	I	L	D	E	V	L	R	H	R	.	.	S	T	I	V	F	T	N	S	R	G	L	A	E	K	L	T	A	R	L	N	E	L	Y	A	A	R	L	Q	.	R	S	P	S
Query Conservation																																															.	.																													.
Alig confidence																																															.	.																													.
Template Conservation
Template Sequence		L	K	F	K	V	D	Y	N	D	V	R	P	Q	F	K	S	L	E	T	E	R	I	Q	E	I	T	Q	Y	I	L	N	N	F	R	Q	K	T	H	R	T	F	P	G	S	K	G	F	N	A	M	L	A	V	S	S	V	D	A	A	K	A	Y	Y	A	T	F	K	P	L	R	I	A	T	I	F	S	F	A	G	E
Template Known Secondary structure													T	T	T	T	T	T	T																				T			S	T	T											S	S
Template Predicted Secondary structure
Template SS confidence
		473	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.
		326	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	A	V	D	A	A	H	F	E	S	T	S	G	A	T	S	N	R	V	Q	S	S	D	V	F	I	A	R	S	H	H	G	S	V	S	K	E	Q	R	A	I	T	E	Q	A	L	K	S	G	E	L	R	C	V	V	A	T	S	S	L	E	L	G	I	D	M	G	A	V	D	L	V	I	Q	V	A	T	P	L	S
Query Conservation
Alig confidence																																																																											.
Template Conservation																																																																											.
Template Sequence		I	S	D	E	T	F	D	T	A	K	E	F	L	D	A	A	I	R	E	Y	N	S	H	F	K	T	N	F	S	T	D	S	N	G	F	Q	N	Y	Y	R	D	L	A	Q	R	V	K	N	Q	D	I	D	L	L	I	V	V	G	M	F	L	T	G	F	D	A	P	T	L	N	T	L	F	.	V	D	K	N	L	R
Template Known Secondary structure							S																			T					S	S																	T	T	S	S	S					S	S	T	T	S	S	S				T	T						.			S
Template Predicted Secondary structure																																																																											.
Template SS confidence
		594	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.		.	.	.	670	.	.
		406	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.		.	.	.	.	.	.	.	.
Predicted Secondary structure																		.
Query SS confidence																		.
Query Sequence		V	A	S	G	L	Q	R	I	G	R	A	G	H	Q	V	G	.	G	V	S	K	G	L	F	F
Query Conservation																		.
Alig confidence																		.
Template Conservation
Template Sequence		Y	H	G	L	M	Q	A	F	S	R	T	N	R	I	Y	D	A	T	K	T	F	G	N	I	V
Template Known Secondary structure										G	G	G						T	T			S
Template Predicted Secondary structure
Template SS confidence
		679	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.	700	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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