Job Description P30015 Confidence 100.00% Date Wed Jan 25 15:20:48 GMT 2012 Rank 6 Aligned Residues 452 % Identity 21% Template c2p6uA_ PDB info PDB header:dna binding protein Chain: A: PDB Molecule:afuhel308 helicase; PDBTitle: apo structure of the hel308 superfamily 2 helicase Resolution 3.14 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		17	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		P	A	T	R	D	W	F	L	R	A	F	K	Q	P	T	A	V	Q	P	Q	T	W	H	V	A	A	R	S	E	H	A	L	V	I	A	P	T	G	S	G	K	T	L	A	A	F	L	Y	A	L	D	R	L	F	R	E	G	G	E	D	T	R	E	A	H	K	R	K	T	S	R	I	L	Y	I	S	P	I	K	A
Query Conservation
Alig confidence																																																											.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																											.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		E	L	A	E	S	I	S	S	Y	A	V	G	I	L	F	P	P	Q	A	E	A	V	E	K	V	F	S	G	K	N	L	L	L	A	M	P	T	A	A	G	K	T	L	L	A	E	M	A	M	V	R	E	A	I	K	G	G	.	.	.	.	.	.	.	.	.	.	.	.	.	K	S	L	Y	V	V	P	L	R	A
Template Known Secondary structure												S						S	S	T							T	T		S							S	S																			T		.	.	.	.	.	.	.	.	.	.	.	.	.							S	S
Template Predicted Secondary structure																																																											.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		5	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.														.	.	.	.	.	.	.	.	70	.
		97	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	G	T	D	V	Q	R	N	L	Q	I	P	L	K	G	I	A	D	E	R	R	R	R	G	E	T	E	V	N	L	R	V	G	I	R	T	G	D	T	P	A	Q	E	R	S	K	L	T	R	N	P	P	D	I	L	I	T	T	P	E	S	L	Y	L	M	L	T	S	R	A	R	E	T	L	R	G	V	E	T	V
Query Conservation
Alig confidence																	.	.	.	.	.	.	.	.	.	.	.	.	.																	.	.	.																				.
Template Conservation																	.	.	.	.	.	.	.	.	.	.	.	.	.																	.	.	.																				.
Template Sequence		L	A	G	E	K	Y	E	S	F	K	K	W	E	K	I	.	.	.	.	.	.	.	.	.	.	.	.	.	G	L	R	I	G	I	S	T	G	D	Y	E	S	R	D	E	.	.	.	H	L	G	D	C	D	I	I	V	T	T	S	E	K	A	D	S	L	I	.	R	N	R	A	S	W	I	K	A	V	S	C	L
Template Known Secondary structure											G	G	G	G	T	T	.	.	.	.	.	.	.	.	.	.	.	.	.	T								S			S				T	.	.	.	T	G	G	G		S														.		T	T		S	S	G	G	G
Template Predicted Secondary structure																	.	.	.	.	.	.	.	.	.	.	.	.	.																	.	.	.																				.
Template SS confidence
		80	.	.	.	.	.	.	.	.	.	90	.	.	.	.														.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110				.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.		130	.	.	.	.	.	.	.	.	.	140	.	.
		177	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	I	D	E	V	H	A	V	A	G	S	K	R	G	A	H	L	A	L	S	L	E	R	L	D	A	L	L	H	T	S	A	Q	R	I	G	L	S	A	T	V	R	S	A	S	D	V	A	A	F	L	G	G	D	R	P	V	T	V	V	N	P	P	A	M	R	H	P	Q	I	R	I	V	V	P	V	A	N	M	D
Query Conservation
Alig confidence																															.																							.	.	.	.
Template Conservation																															.																							.	.	.	.
Template Sequence		V	V	D	E	I	H	L	L	D	S	E	K	R	G	A	T	L	E	I	L	V	T	K	M	R	R	M	N	K	.	A	L	R	V	I	G	L	S	A	T	A	P	N	V	T	E	I	A	E	W	L	D	.	.	.	.	A	D	Y	Y	V	S	D	W	R	P	V	P	L	V	E	G	V	L	C	E	G	T	L	E
Template Known Secondary structure				T	T	G	G	G	G	G		T	T	T																T	.	T											T	T									T	.	.	.	.										S	S									T	T
Template Predicted Secondary structure																															.																							.	.	.	.
Template SS confidence
		143	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.		.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.					.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.
		257	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	V	S	S	V	A	S	G	T	G	E	D	S	H	A	G	R	E	G	S	I	W	P	Y	I	E	T	G	I	L	D	E	V	L	R	H	R	S	T	I	V	F	T	N	S	R	G	L	A	E	K	L	T	A	R	L	N	E	L	Y	A	A	R	L	Q	R	S	P	S	I	A	V	D	A	A	H	F	E	S	T
Query Conservation
Alig confidence															.	.	.	.	.	.	.	.	.	.	.																																																					.	.	.
Template Conservation															.	.	.	.	.	.	.	.	.	.	.																																																					.	.	.
Template Sequence		L	F	D	G	A	F	S	T	S	R	R	V	K	.	.	.	.	.	.	.	.	.	.	.	F	E	E	L	V	E	E	C	V	A	E	N	G	G	V	L	V	F	E	S	T	R	R	G	A	E	K	T	A	V	K	L	S	A	I	T	A	K	Y	V	E	N	E	G	L	E	K	A	I	L	E	E	.	.	.	N
Template Known Secondary structure					T	T						B			.	.	.	.	.	.	.	.	.	.	.												T	S							S	S																	T	T												T	T	.	.	.
Template Predicted Secondary structure															.	.	.	.	.	.	.	.	.	.	.																																																					.	.	.
Template SS confidence
		218	.	220	.	.	.	.	.	.	.	.	.	230												.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.				.
		337	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	G	A	T	S	N	R	V	Q	S	S	D	V	F	I	A	R	S	H	H	G	S	V	S	K	E	Q	R	A	I	T	E	Q	A	L	K	S	G	E	L	R	C	V	V	A	T	S	S	L	E	L	G	I	D	M	G	A	V	D	L	V	I	Q	V	A	T	P	L	S	V	A	S	G	L	Q	R	I	G	R	A
Query Conservation
Alig confidence
Template Conservation
Template Sequence		E	G	E	M	S	R	K	L	A	E	C	V	R	K	G	A	A	F	H	H	A	G	L	L	N	G	Q	R	R	V	V	E	D	A	F	R	R	G	N	I	K	V	V	V	A	T	P	T	L	V	N	L	P	A	R	R	V	I	V	R	S	L	Y	R	F	K	R	I	K	V	S	E	Y	K	Q	M	A	G	R	A
Template Known Secondary structure			S												T	S						T	T	S															T	S								T	T							S							S	S															T	T
Template Predicted Secondary structure
Template SS confidence
		284	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.
		417	.		.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.		.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.
Predicted Secondary structure				.																																																									.
Query SS confidence				.																																																									.
Query Sequence		G	H	.	Q	V	G	G	V	S	K	G	L	F	F	P	R	T	R	R	D	L	V	D	S	A	V	I	V	E	C	M	F	A	G	R	L	E	N	L	T	P	P	H	N	P	L	D	V	L	A	Q	Q	T	V	A	A	A	A	M	.	D	A	L	Q	V	D	E	W	Y	S	R	V	R	R	A	A	P	W	K	D
Query Conservation				.																																																									.
Alig confidence				.																		.	.	.	.																																				.
Template Conservation																						.	.	.	.
Template Sequence		G	R	P	G	M	D	E	R	G	E	A	I	I	I	V	G	K	R	D	R	.	.	.	.	E	I	A	V	K	R	Y	I	F	G	E	P	E	R	I	T	S	K	L	G	V	E	T	H	L	R	F	H	S	L	S	I	I	C	D	G	Y	A	K	T	L	E	E	L	E	D	F	F	A	D	T	F	F	F	K	Q
Template Known Secondary structure				T	T	T		S	S									S	S		T	.	.	.	.						T	T	T	S										T	T	S															T	S		S	S										T	S
Template Predicted Secondary structure																						.	.	.	.
Template SS confidence
		371	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390					.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.
		495	.				.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.
Predicted Secondary structure				.	.	.
Query SS confidence				.	.	.
Query Sequence		L	P	.	.	.	R	R	V	F	D	A	T	L	D	M	L	S	G	R	Y	P	S	G	D	F	S	A	F	R	P
Query Conservation				.	.	.
Alig confidence				.	.	.
Template Conservation
Template Sequence		N	E	I	S	L	S	Y	E	L	E	R	V	V	R	Q	L	E	N	W	G	M	V	V	E	A	A	H	L	A	P
Template Known Secondary structure																				T	T	S				S	S	S
Template Predicted Secondary structure
Template SS confidence
		447	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.