Job Description P30015 Confidence 96.22% Date Wed Jan 25 15:20:48 GMT 2012 Rank 172 Aligned Residues 117 % Identity 19% Template c2j37W_ PDB info PDB header:ribosome Chain: W: PDB Molecule:signal recognition particle 54 kda protein PDBTitle: model of mammalian srp bound to 80s rncs Resolution 8.00 Å

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		47	.	.	50	.	.	.	.	.	.	.	.						.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.			.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.
Predicted Secondary structure														.	.	.	.	.																																			.	.
Query SS confidence														.	.	.	.	.																																			.	.
Query Sequence		A	L	V	I	A	P	T	G	S	G	K	T	.	.	.	.	.	L	A	A	F	L	Y	A	L	D	R	L	F	R	E	G	G	E	D	T	R	E	A	H	K	R	K	T	S	R	I	L	Y	I	S	.	.	P	I	K	A	L	G	T	D	V	Q	R	N	L	Q	I	P	L	K	G	I	A	D	E	R	R	R	R
Query Conservation														.	.	.	.	.																																			.	.
Alig confidence														.	.	.	.	.						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.												.	.																		.	.	.	.	.	.	.	.	.	.
Template Conservation																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																															.	.	.	.	.	.	.	.	.	.
Template Sequence		I	M	F	V	G	L	Q	G	S	G	K	T	T	T	C	S	K	L	A	Y	Y	Y	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	Q	R	K	G	W	K	T	C	L	I	C	A	D	T	F	R	A	G	A	F	D	Q	L	K	Q	N	A	T	K	A	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure							S	T	T	S	S													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.			T	T											S	S	S														.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																															.	.	.	.	.	.	.	.	.	.
Template SS confidence
		104	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.																			.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.
		120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	E	T	E	V	N	L	R	V	G	I	R	T	G	D	T	P	A	Q	E	R	S	K	L	T	R	N	P	P	D	I	L	I	T	T	P	E	S	L	Y	L	M	L	T	S	R	A	R	E	T	L	R	G	V	E	T	V	I	I	D	E	V	H	A	V	A	G	S	K	R	G	A	H	L	A	L	S	L	E	R
Query Conservation
Alig confidence		.	.	.	.	.																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																							.	.	.
Template Conservation		.	.	.	.	.																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																							.	.	.
Template Sequence		.	.	.	.	.	R	I	P	F	Y	G	S	Y	T	E	M	D	P	V	I	I	A	S	E	G	V	E	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	K	F	K	N	E	N	F	E	I	I	I	V	D	T	S	G	R	H	K	Q	E	D	.	.	.	S	L	F	E	E	M	L	Q
Template Known Secondary structure		.	.	.	.	.	T										S												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.					T	T													T	T			.	.	.
Template Predicted Secondary structure		.	.	.	.	.																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																							.	.	.
Template SS confidence
							156	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.																					.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.				200	.	.	.	.	.	.	.
		200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	D	A	L	L	H	T	S	A	Q	R	I	G	L	S	A	T	V	R	S
Query Conservation
Alig confidence
Template Conservation
Template Sequence		V	A	N	A	I	Q	P	D	N	I	V	Y	V	M	D	A	S	I	G	Q
Template Known Secondary structure									S								T	T			T
Template Predicted Secondary structure
Template SS confidence
		208	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions