Job Description P30015 Confidence 100.00% Date Wed Jan 25 15:20:48 GMT 2012 Rank 11 Aligned Residues 329 % Identity 22% Template c2eyqA_ PDB info PDB header:hydrolase Chain: A: PDB Molecule:transcription-repair coupling factor; PDBTitle: crystal structure of escherichia coli transcription-repair2 coupling factor Resolution 3.20 Å

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		16	.	.	.	20	.	.	.	.	.	.	.	.		.	30	.	.	.	.	.	.	.	.	.	40	.	.					.	.	.			.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.
Predicted Secondary structure															.															.	.	.	.				.	.
Query SS confidence															.															.	.	.	.				.	.
Query Sequence		S	P	A	T	R	D	W	F	L	R	A	F	K	.	Q	P	T	A	V	Q	P	Q	T	W	H	V	A	A	.	.	.	.	R	S	E	.	.	H	A	L	V	I	A	P	T	G	S	G	K	T	L	A	A	F	L	Y	A	L	D	R	L	F	R	E	G	G	E	D	T	R	E	A	H	K	R	K	T	S	R	I
Query Conservation															.															.	.	.	.				.	.
Alig confidence															.															.	.	.	.				.	.																									.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																															.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		D	R	E	Q	Y	Q	L	F	C	D	S	F	P	F	E	T	T	P	D	Q	A	Q	A	I	N	A	V	L	S	D	M	C	Q	P	L	A	M	D	R	L	V	C	G	D	V	G	F	G	K	T	E	V	A	M	R	A	A	F	L	A	V	.	.	.	.	.	.	.	.	.	.	.	.	.	D	N	H	K	Q	V
Template Known Secondary structure												T			S																			S	S	S												T	T	T													.	.	.	.	.	.	.	.	.	.	.	.	.	T	T	T
Template Predicted Secondary structure																																																															.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		586	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.														.	.	.	650	.	.
		89	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.					.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.
Predicted Secondary structure																																																												.	.	.	.
Query SS confidence																																																												.	.	.	.
Query Sequence		L	Y	I	S	P	I	K	A	L	G	T	D	V	Q	R	N	L	Q	I	P	L	K	G	I	A	D	E	R	R	R	R	G	E	T	E	V	N	L	R	V	G	I	R	T	G	D	T	P	A	Q	E	R	S	K	L	T	R	N	.	.	.	.	P	P	D	I	L	I	T	T	P	E	S	L	Y	L	M	L	T	S
Query Conservation																																																												.	.	.	.
Alig confidence																										.	.	.	.	.	.	.	.	.	.	.	.																							.	.	.	.													.	.	.	.	.	.
Template Conservation																										.	.	.	.	.	.	.	.	.	.	.	.																																							.	.	.	.	.	.
Template Sequence		A	V	L	V	P	T	T	L	L	A	Q	Q	H	Y	D	N	F	R	D	R	F	A	N	W	.	.	.	.	.	.	.	.	.	.	.	.	P	V	R	I	E	M	I	S	R	F	R	S	A	K	E	Q	T	Q	I	L	A	E	V	A	E	G	K	I	D	I	L	I	G	T	H	K	L	L	.	.	.	.	.	.
Template Known Secondary structure						S	S															S	T	T	T	.	.	.	.	.	.	.	.	.	.	.	.	T							S	T	T	S														T	T			S						T				.	.	.	.	.	.
Template Predicted Secondary structure																										.	.	.	.	.	.	.	.	.	.	.	.																																							.	.	.	.	.	.
Template SS confidence
		653	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.													.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.	700	.	.	.	.	.	.	.	.	.	710	.	.	.	.
		165	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	A	R	E	T	L	R	G	V	E	T	V	I	I	D	E	V	H	A	V	A	G	S	K	R	G	A	H	L	A	L	S	L	E	R	L	D	A	L	L	H	T	S	A	Q	R	I	G	L	S	A	T	V	R	S	A	S	D	V	A	A	F	L	G	G	D	R	P	V	T	V	V	N	P	P	A	M	R	H	P
Query Conservation
Alig confidence																							.	.	.	.	.	.	.	.													.												.
Template Conservation																							.	.	.	.	.	.	.	.													.												.
Template Sequence		Q	S	D	V	K	F	K	D	L	G	L	L	I	V	D	E	E	H	R	F	G	.	.	.	.	.	.	.	.	V	R	H	K	E	R	I	K	A	M	R	A	.	N	V	D	I	L	T	L	T	A	T	P	.	I	P	R	T	L	N	M	A	M	S	G	M	R	D	L	S	I	I	A	T	P	P	A	R	R	L
Template Known Secondary structure			S					S	S								S	G	G	G	S		.	.	.	.	.	.	.	.												T	.	T	S							S	S		.										T	T	T	S											B		B
Template Predicted Secondary structure																							.	.	.	.	.	.	.	.													.												.
Template SS confidence
		715	.	.	.	.	720	.	.	.	.	.	.	.	.	.	730	.	.	.	.	.									.	.	.	.	740	.	.	.	.	.	.	.		.	.	750	.	.	.	.	.	.	.	.		.	760	.	.	.	.	.	.	.	.	.	770	.	.	.	.	.	.	.	.	.	780	.	.	.	.
		245	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	I	R	I	V	V	P	V	A	N	M	D	D	V	S	S	V	A	S	G	T	G	E	D	S	H	A	G	R	E	G	S	I	W	P	Y	I	E	T	G	I	L	D	E	V	L	R	H	R	S	T	I	V	F	T	N	S	R	G	L	A	E	K	L	T	A	R	L	N	E	L	Y	A	A	R	L	Q	R	S	P
Query Conservation
Alig confidence														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																										.	.	.	.
Template Conservation														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																										.	.	.	.
Template Sequence		A	V	K	T	F	V	R	E	Y	D	S	M	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	V	V	R	E	A	I	L	R	E	I	L	R	G	G	Q	V	Y	Y	L	Y	N	D	V	E	N	I	Q	K	A	A	E	R	L	A	E	L	V	P	E	A	R	.	.	.	.
Template Known Secondary structure														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.											T	T	T										S	S														T	T	S		.	.	.	.
Template Predicted Secondary structure														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																										.	.	.	.
Template SS confidence
		785	.	.	.	.	790	.	.	.	.	.	.																								.	.	.	800	.	.	.	.	.	.	.	.	.	810	.	.	.	.	.	.	.	.	.	820	.	.	.	.	.	.	.	.	.	830	.	.	.	.	.	.	.
		325	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	I	A	V	D	A	A	H	F	E	S	T	S	G	A	T	S	N	R	V	Q	S	S	D	V	F	I	A	R	S	H	H	G	S	V	S	K	E	Q	R	A	I	T	E	Q	A	L	K	S	G	E	L	R	C	V	V	A	T	S	S	L	E	L	G	I	D	M	G	A	V	D	L	V	I	Q	V	A	T	P	L
Query Conservation
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	I	A	I	G	H	G	Q	M	R	E	R	E	L	E	R	V	M	N	D	F	H	H	Q	R	F	N	V	L	V	C	T	T	I	I	E	T	G	I	D	I	P	T	A	N	T	I	I	I	E	R	A	D	H
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.						S	S															T	T	S							S	S	T	T	G	G	G	S			T	T							T	T	T	T	S
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
																													838	.	840	.	.	.	.	.	.	.	.	.	850	.	.	.	.	.	.	.	.	.	860	.	.	.	.	.	.	.	.	.	870	.	.	.	.	.	.	.	.	.	880	.	.	.	.	.	.	.	.	.	890
			405	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440
Predicted Secondary structure		.
Query SS confidence		.
Query Sequence		.	S	V	A	S	G	L	Q	R	I	G	R	A	G	H	Q	V	G	G	V	S	K	G	L	F	F	P	R	T	R	R	D	L	V	D	S	A
Query Conservation		.
Alig confidence		.																.
Template Conservation																		.
Template Sequence		F	G	L	A	Q	L	H	Q	L	R	G	R	V	G	R	S	.	H	H	Q	A	Y	A	W	L	L	T	P	H	P	K	A	M	T	T	D	A
Template Known Secondary structure		S										T	T			B	T	.	T	B											G	G	G	S
Template Predicted Secondary structure																		.
Template SS confidence
		891	.	.	.	.	.	.	.	.	900	.	.	.	.	.	.		.	.	.	910	.	.	.	.	.	.	.	.	.	920	.	.	.	.	.	.