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Job DescriptionP30015
Confidence100.00%DateWed Jan 25 15:20:48 GMT 2012
Rank12Aligned Residues376
% Identity22%Templatec2db3D_
PDB info PDB header:hydrolase/rnaChain: D: PDB Molecule:atp-dependent rna helicase vasa; PDBTitle: structural basis for rna unwinding by the dead-box protein2 drosophila vasa
Resolution2.20 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


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Query Sequence  ADNPDPSSLLPDV. FSPATRDWF. LRAFKQPTAVQPQTWHVAARSEHALVIAPTGSGKTLAAFLYALDRLFREGGEDTRE
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Template Sequence  SDVPQPIQHFTSADLRDIIIDNVNKSGYKIPTPIQKCSIPVISSGRDLMACAQTGSGKTAAFLLPILSKLLEDPHEL. . .
Template Known Secondary structure  SS




SSTTSS


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   238.240.........250.........260.........270.........280.........290.........300.........310....
 
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Query Sequence  AHKRKTSRILYISPIKALGTDVQRNLQIPLKGIADERRRRGETEVNLRVGIRTGDTPAQERSKLTRNPPDILITTPESLY
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Template Sequence  . . ELGRPQVVIVSPTRELAIQIFNEARKFAFES. . . . . . . . . . . . YLKIGIVYGGTSFRHQNECITRGCHVVIATPGRLL
Template Known Secondary structure  ..BTTB
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   315....320.........330.........340..... ....350.........360.........370.........380
 
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Query Sequence  LMLTSRARETLRGVETVIIDEVHAVAGSKRGAHLALSLERLDALLHTSAQRIGLSATVRSASDVAAFLGGDRPVTVVNPP
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Template Sequence  DFVD. RTFITFEDTRFVVLDEADRMLDMGFSEDMRRIMTHV. . TMRPEHQTLMFSATFPEEIQRMAGEFLKNYVFVAIGI
Template Known Secondary structure  .TSS

TT

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   381... .....390.........400.........410.........420 .........430.........440.........450.......
 
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Query Sequence  AMRHPQIRIVVPVANMDDVSSVASGTGEDSHAGREGSIWPYIETGILDEVLRHRSTIVFTNSRGLAEKLTARLNELYAAR
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Template Sequence  VGGACSDVKQTIYEVNKYAKR. . . . . . . . . . . . . . . . . . . . . SKLIEILSEQADGTIVFVETKRGADFLASFLSEKEFP.
Template Known Secondary structure  TT


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   458.460.........470........ .480.........490.........500.........510.....
 
   320.........330.........340.........350.........360.........370.........380.........390.........
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Query Sequence  LQRSPSIAVDAAHFESTSGATSNRVQSSDVFIARSHHGSVSKEQRAITEQALKSGELRCVVATSSLELGIDMGAVDLVIQ
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Template Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . TTSIHGDRLQSQREQALRDFKNGSMKVLIATSVASRGLDIKNIKHVIN
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   516...520.........530.........540.........550.........560...
 
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Query Sequence  VATPLSVASGLQRIGRAGHQVGGVSKGLFFPRTRRDLVDSAVIVECMFAGRLE
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Template Sequence  YDMPSKIDDYVHRIGRTGRV. GNNGRATSFFDPEKDRAIAADLVKILEGSGQT
Template Known Secondary structure  SS

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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