Job Description P30015 Confidence 93.75% Date Wed Jan 25 15:20:48 GMT 2012 Rank 211 Aligned Residues 136 % Identity 20% Template c1qzwC_ PDB info PDB header:signaling protein/rna Chain: C: PDB Molecule:signal recognition 54 kda protein; PDBTitle: crystal structure of the complete core of archaeal srp and2 implications for inter-domain communication Resolution 4.10 Å

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		47	.	.	50	.	.	.	.	.	.	.	.						.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.			.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.
Predicted Secondary structure														.	.	.	.	.																																			.	.
Query SS confidence														.	.	.	.	.																																			.	.
Query Sequence		A	L	V	I	A	P	T	G	S	G	K	T	.	.	.	.	.	L	A	A	F	L	Y	A	L	D	R	L	F	R	E	G	G	E	D	T	R	E	A	H	K	R	K	T	S	R	I	L	Y	I	S	.	.	P	I	K	A	L	G	T	D	V	Q	R	N	L	Q	I	P	L	K	G	I	A	D	E	R	R	R	R
Query Conservation														.	.	.	.	.																																			.	.
Alig confidence														.	.	.	.	.						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.												.	.																			.	.	.	.	.	.	.	.	.
Template Conservation																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																.	.	.	.	.	.	.	.	.
Template Sequence		I	M	L	V	G	V	Q	G	S	G	K	T	T	T	A	G	K	L	A	Y	F	Y	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	K	K	R	G	Y	K	V	G	L	V	A	A	D	V	Y	R	P	A	A	Y	D	Q	L	L	Q	L	G	N	Q	I	G	.	.	.	.	.	.	.	.	.
Template Known Secondary structure							S	S	S	S	S	S	T	T	T									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.		T	T	S					B						S	S	S		S											T	T	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																.	.	.	.	.	.	.	.	.
Template SS confidence
		99	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120																			.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.
		120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	E	T	E	V	N	L	R	V	G	I	R	T	G	D	T	P	A	Q	E	R	S	K	L	T	R	N	P	P	D	I	L	I	T	T	P	E	S	L	Y	L	M	L	T	S	R	A	R	E	T	L	R	G	V	E	T	V	I	I	D	E	V	H	A	V	A	G	S	K	R	G	A	H	L	A	L	S	L	E	R
Query Conservation
Alig confidence		.	.	.	.	.	.	.	.														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.										.	.	.																						.
Template Conservation		.	.	.	.	.	.	.	.														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.										.	.	.																						.
Template Sequence		.	.	.	.	.	.	.	.	V	Q	V	Y	G	E	P	N	N	Q	N	P	I	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	E	I	A	K	K	G	V	D	I	.	.	.	F	V	K	N	K	M	D	I	I	I	V	D	T	A	G	R	H	G	Y	G	E	.	E	T	K	L	L	E	E	M	K	E
Template Known Secondary structure		.	.	.	.	.	.	.	.							S	S				T	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.										.	.	.				T	T		S									S			S	S	T	.
Template Predicted Secondary structure		.	.	.	.	.	.	.	.														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.										.	.	.																						.
Template SS confidence
										152	.	.	.	.	.	.	.	160	.	.	.	.																.	.	.	.	.	170	.	.	.				.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.		.	.	.	.	.	200	.	.	.	.
		200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.			.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.
Predicted Secondary structure																				.	.
Query SS confidence																				.	.
Query Sequence		L	D	A	L	L	H	T	S	A	Q	R	I	G	L	S	A	T	V	.	.	R	S	A	S	D	V	A	A	F	L	G	G	D	R	P	V	T	V	V
Query Conservation																				.	.
Alig confidence																				.	.
Template Conservation
Template Sequence		M	Y	D	V	L	K	P	D	D	V	I	L	V	I	D	A	S	I	G	Q	K	A	Y	D	L	A	S	R	F	H	Q	A	S	P	I	G	S	V	I
Template Known Secondary structure									S								T	T	T	G	G	G	G									T	T		S	S
Template Predicted Secondary structure
Template SS confidence
		205	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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