Job Description P76909 Confidence 100.00% Date Wed Jan 25 15:21:09 GMT 2012 Rank 17 Aligned Residues 204 % Identity 26% Template c3g5uB_ PDB info PDB header:membrane protein Chain: B: PDB Molecule:multidrug resistance protein 1a; PDBTitle: structure of p-glycoprotein reveals a molecular basis for2 poly-specific drug binding Resolution 3.80 Å

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		2	.	.	.	.	.	.	.	10	.				.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.			.	.	.	.
Predicted Secondary structure												.	.	.																																																														.	.
Query SS confidence												.	.	.																																																														.	.
Query Sequence		L	C	V	K	N	V	S	L	R	L	.	.	.	P	E	S	R	L	L	T	N	V	N	F	T	V	D	K	G	D	I	V	T	L	M	G	P	S	G	C	G	K	S	T	L	F	S	W	M	I	G	A	L	A	E	Q	F	S	C	T	G	E	L	W	L	N	E	Q	R	I	D	I	L	P	.	.	T	A	Q	R
Query Conservation												.	.	.																																																														.	.
Alig confidence												.	.	.																																											.	.	.																	.	.
Template Conservation																																																									.	.	.
Template Sequence		V	Q	F	S	G	V	V	F	N	Y	P	T	R	P	S	I	P	V	L	Q	G	L	S	L	E	V	K	K	G	Q	T	L	A	L	V	G	S	S	G	C	G	K	S	T	V	V	Q	L	L	E	R	F	Y	D	P	.	.	.	M	A	G	S	V	F	L	D	G	K	E	I	K	Q	L	N	V	Q	W	L	R	A
Template Known Secondary structure												S		G	G	G			S			S							S	S	S							S	S	S	T	T									T	T	S	S			.	.	.	S						S	S	S	S		B	T	S	S						T	T
Template Predicted Secondary structure																																																									.	.	.
Template SS confidence
		1031	.	.	.	.	.	.	.	.	1040	.	.	.	.	.	.	.	.	.	1050	.	.	.	.	.	.	.	.	.	1060	.	.	.	.	.	.	.	.	.	1070	.	.	.	.	.	.	.	.	.	1080	.	.	.	.	.				.	.	.	.	1090	.	.	.	.	.	.	.	.	.	1100	.	.	.	.	.	.	.
		77	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.												.	.	.	.	.	.	.	140	.	.	.	.	.
Predicted Secondary structure																																																										.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																										.	.	.	.	.	.	.	.	.	.	.
Query Sequence		Q	I	G	I	L	F	Q	D	A	L	L	F	D	Q	F	S	V	G	Q	N	L	L	L	A	L	P	A	T	L	K	G	N	A	R	R	N	A	V	N	D	A	L	E	R	S	G	L	E	G	A	F	H	Q	D	P	A	.	.	.	.	.	.	.	.	.	.	.	T	L	S	G	G	Q	R	A	R	V	A	L	L
Query Conservation																																																										.	.	.	.	.	.	.	.	.	.	.
Alig confidence																.												.	.	.																												.	.	.	.	.	.	.	.	.	.	.
Template Conservation																.												.	.	.
Template Sequence		Q	L	G	I	V	S	Q	E	P	I	L	F	D	C	.	S	I	A	E	N	I	A	Y	G	D	N	.	.	.	S	R	V	V	S	Y	E	E	I	V	R	A	A	K	E	A	N	I	H	Q	F	I	D	S	L	P	D	K	Y	N	T	R	V	G	D	K	G	T	Q	L	S	G	G	Q	K	Q	R	I	A	I	A
Template Known Secondary structure		S						S	S					S	S	.	B						T				S	.	.	.	S																T						S	S	T	T	T	G	G	G		B		S	T	T	S		S	S
Template Predicted Secondary structure																.												.	.	.
Template SS confidence
		1108	.	1110	.	.	.	.	.	.	.	.	.	1120	.		.	.	.	.	.	.	.	.	1130	.	.				.	.	.	.	.	.	.	1140	.	.	.	.	.	.	.	.	.	1150	.	.	.	.	.	.	.	.	.	1160	.	.	.	.	.	.	.	.	.	1170	.	.	.	.	.	.	.	.	.	1180	.	.	.
		146	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.			.	.	.	210	.	.	.	.
Predicted Secondary structure																																																															.	.
Query SS confidence																																																															.	.
Query Sequence		R	A	L	L	A	Q	P	K	A	L	L	L	D	E	P	F	S	R	L	D	V	A	L	R	D	N	F	R	Q	W	V	F	S	E	V	R	A	L	A	I	P	V	V	Q	V	T	H	D	L	Q	D	V	P	A	D	S	S	V	L	D	M	.	.	A	Q	W	S	E	N	Y	N
Query Conservation																																																															.	.
Alig confidence																																						.	.																								.	.
Template Conservation																																						.	.
Template Sequence		R	A	L	V	R	Q	P	H	I	L	L	L	D	E	A	T	S	A	L	D	T	E	S	E	K	V	V	Q	E	A	L	D	K	A	R	E	.	.	G	R	T	C	I	V	I	A	H	R	L	S	T	I	Q	N	A	D	L	I	V	V	I	Q	N	G	K	V	K	E	H	G	T
Template Known Secondary structure									S	S					S		S	S	S																	S	S	.	.	S	S							S		T	T	G	G	G	S		S							T	B
Template Predicted Secondary structure																																						.	.
Template SS confidence
		1184	.	.	.	.	.	1190	.	.	.	.	.	.	.	.	.	1200	.	.	.	.	.	.	.	.	.	1210	.	.	.	.	.	.	.	.	.			1220	.	.	.	.	.	.	.	.	.	1230	.	.	.	.	.	.	.	.	.	1240	.	.	.	.	.	.	.	.	.	1250	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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