Job Description P76909 Confidence 100.00% Date Wed Jan 25 15:21:09 GMT 2012 Rank 40 Aligned Residues 207 % Identity 26% Template c3b5xB_ PDB info PDB header:membrane protein Chain: B: PDB Molecule:lipid a export atp-binding/permease protein msba; PDBTitle: crystal structure of msba from vibrio cholerae Resolution 5.50 Å

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		2	.	.	.	.	.	.	.	10	.			.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.			.	.	.	.	.
Predicted Secondary structure												.	.																																																														.	.
Query SS confidence												.	.																																																														.	.
Query Sequence		L	C	V	K	N	V	S	L	R	L	.	.	P	E	S	R	L	L	T	N	V	N	F	T	V	D	K	G	D	I	V	T	L	M	G	P	S	G	C	G	K	S	T	L	F	S	W	M	I	G	A	L	A	E	Q	F	S	C	T	G	E	L	W	L	N	E	Q	R	I	D	I	L	P	.	.	T	A	Q	R	Q
Query Conservation												.	.																																																														.	.
Alig confidence												.	.																																											.	.	.																	.	.
Template Conservation																																																								.	.	.
Template Sequence		V	D	V	K	D	V	T	F	T	Y	Q	G	K	E	K	P	A	L	S	H	V	S	F	S	I	P	Q	G	K	T	V	A	L	V	G	R	S	G	S	G	K	S	T	I	A	N	L	F	T	R	F	Y	D	V	.	.	.	D	S	G	S	I	C	L	D	G	H	D	V	R	D	Y	K	L	T	N	L	R	R	H
Template Known Secondary structure			B			S					S	S	T	T	S			S	S		S							S	S									T	T	T	T							T	T	S			S	S		.	.	.				S				T	T			S	T	T	S		S	S	S	S	S	T	T
Template Predicted Secondary structure																																																								.	.	.
Template SS confidence
		342	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.				.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.
		78	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.						.	.	.	.	.	.	.	120	.			.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150
Predicted Secondary structure																																					.	.	.	.	.										.	.
Query SS confidence																																					.	.	.	.	.										.	.
Query Sequence		I	G	I	L	F	Q	D	A	L	L	F	D	Q	F	S	V	G	Q	N	L	L	L	A	L	P	A	T	L	K	G	N	A	R	R	N	.	.	.	.	.	A	V	N	D	A	L	E	R	S	.	.	G	L	E	G	A	F	H	Q	D	P	A	T	L	S	G	G	Q	R	A	R	V	A	L	L	R	A	L	L	A
Query Conservation																																					.	.	.	.	.										.	.
Alig confidence															.																						.	.	.	.	.										.	.
Template Conservation															.
Template Sequence		F	A	L	V	S	Q	N	V	H	L	F	N	D	.	T	I	A	N	N	I	A	Y	A	A	E	G	E	Y	T	R	E	Q	I	E	Q	A	A	R	Q	A	H	A	M	E	F	I	E	N	M	P	Q	G	L	D	T	V	I	G	E	N	G	T	S	L	S	G	G	Q	R	Q	R	V	A	I	A	R	A	L	L	R
Template Known Secondary structure							S	S					T	T	.								T	T	S	S	S	S			S		S	T	T						T	S	T	T	T	T	T	T	S	S	S	S		S	S					S	S		S	S	S		T	T												T
Template Predicted Secondary structure															.
Template SS confidence
		419	420	.	.	.	.	.	.	.	.	.	430	.		.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.
		151	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.			.	.	.	210	.	.	.	.
Predicted Secondary structure																																																										.	.
Query SS confidence																																																										.	.
Query Sequence		Q	P	K	A	L	L	L	D	E	P	F	S	R	L	D	V	A	L	R	D	N	F	R	Q	W	V	F	S	E	V	R	A	L	A	I	P	V	V	Q	V	T	H	D	L	Q	D	V	P	A	D	S	S	V	L	D	M	.	.	A	Q	W	S	E	N	Y	N
Query Conservation																																																										.	.
Alig confidence																															.	.																										.	.
Template Conservation																															.	.
Template Sequence		D	A	P	V	L	I	L	D	E	A	T	S	A	L	D	T	E	S	E	R	A	I	Q	A	A	L	D	E	L	.	.	Q	K	N	K	T	V	L	V	I	A	H	R	L	S	T	I	E	Q	A	D	E	I	L	V	V	D	E	G	E	I	I	E	R	G	R
Template Known Secondary structure				S	S						S		S	S			T	T	T										T	T	.	.	T	T	T	S							S		G	G	G	G	G	T		S							S	S						S
Template Predicted Secondary structure																															.	.
Template SS confidence
		498	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.			.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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