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Job DescriptionP31808
Confidence100.00%DateThu Jan 5 11:48:45 GMT 2012
Rank108Aligned Residues229
% Identity23%Templatec2dteB_
PDB info PDB header:oxidoreductaseChain: B: PDB Molecule:glucose 1-dehydrogenase related protein; PDBTitle: structure of thermoplasma acidophilum aldohexose dehydrogenase (aldt)2 in complex with nadh
Resolution1.65 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   8.10.........20.........30.........40.........50.........60.........70.........80.......
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Query Sequence  DLLNDRIILVTGASDGIGREAAMTYARYGATVILLGRNEEKLRQVASHINEETGRQPQWFILDLLTCTSENCQQLAQRIA
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Template Sequence  SDLRDKVVIVTGASMGIGRAIAERFVDEGSKVIDLSIHDP. . . . . . . . . . . . . . GEAKYDHIECDVTNPDQVKASIDHIF
Template Known Secondary structure  GGGTT
T
SSTT
SS

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S
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TT
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   3......10.........20.........30.........40.. .......50.........60........
 
   88.90.........100.........110.........120.........130.........140.........150.........160.......
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Query Sequence  VNYPRLDGVLHNAGLLGDVCPMSEQNPQVWQDVMQVNVNATFMLTQALLPLLLKSDAGSLVFTSSSVGRQGRANWGAYAA
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Template Sequence  KEYGSISVLVNNAGIESYGK. IESMSMGEWRRIIDVNLFGYYYASKFAIPYMIRSRDPSIVNISSVQASIITKNASAYVT
Template Known Secondary structure  S









B
.TTTS
TTTSSS


GGGTS

TTB
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   6970.........80........ .90.........100.........110.........120.........130.........140.......
 
   168.170.........180.........190.........200.. .......210.........220........
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Query Sequence  SKFATEGMMQVLADEYQQRLRVNCINPGGTRTAMR. . . . . . . . . . . . . . . . . . . ASAFPTEDPQKLKTPADIMPLYLWLM
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Template Sequence  SKHAVIGLTKSIALDYAPLLRCNAVCPATIDTPLVRKAAELEVGSDPMRIEKKISEWGHEHPMQRIGKPQEVASAVAFLA
Template Known Secondary structure  TTTS
SBSS
S
STTSS
B
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   148.150.........160.........170.........180.........190.........200.........210.........220.......
 
   229230.........240.........250.
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Query Sequence  GDDSRRKTGMTFDAQPGRKPGIS
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Template Sequence  SREASFITGTCLYVDGGLSIRAP
Template Known Secondary structure  SGGGTT

S
STTGGG

S
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   228.230.........240.........250
 
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No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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