Job Description P0AAF3 Confidence 100.00% Date Thu Jan 5 11:12:46 GMT 2012 Rank 1 Aligned Residues 433 % Identity 23% Template c1yqtA_ PDB info PDB header:hydrolyase/translation Chain: A: PDB Molecule:rnase l inhibitor; PDBTitle: rnase-l inhibitor Resolution 1.90 Å

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		11	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60									.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.
Predicted Secondary structure																																																				.	.	.	.	.	.	.	.
Query SS confidence																																																				.	.	.	.	.	.	.	.
Query Sequence		R	G	I	G	K	T	F	P	G	V	K	A	L	T	D	I	S	F	D	C	Y	A	G	Q	V	H	A	L	M	G	E	N	G	A	G	K	S	T	L	L	K	I	L	S	G	N	Y	A	P	T	.	.	.	.	.	.	.	.	T	G	S	V	V	I	N	G	Q	E	M	S	F	S	D	T	T	A	A	L	N	A
Query Conservation																																																				.	.	.	.	.	.	.	.
Alig confidence																																																				.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		E	D	C	V	H	R	Y	G	V	N	A	F	V	L	Y	R	L	P	V	V	K	E	G	X	V	V	G	I	V	G	P	N	G	T	G	K	S	T	A	V	K	I	L	A	G	Q	L	I	P	N	L	C	G	D	N	D	S	W	D	G	V	I	R	A	F	R	G	N	E	L	Q	N	Y	F	E	K	L	K	N	G
Template Known Secondary structure									S	T	T												T	T	S								T	T	S	S										T	S	S				T	T	T	T			S								T	T	T	S	T										T	T
Template Predicted Secondary structure
Template SS confidence
		77	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.
		83	.	.	.	.	.	.	90	.			.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160
Predicted Secondary structure											.	.
Query SS confidence											.	.
Query Sequence		G	V	A	I	I	Y	Q	E	L	.	.	H	L	V	P	E	M	T	V	A	E	N	I	Y	L	G	Q	L	P	H	K	G	G	I	V	N	R	S	L	L	N	Y	E	A	G	L	Q	L	K	H	L	G	M	D	I	D	P	D	T	P	L	K	Y	L	S	I	G	Q	W	Q	M	V	E	I	A	K	A	L	A	R
Query Conservation											.	.
Alig confidence											.	.																					.	.	.	.	.	.	.	.	.
Template Conservation																																	.	.	.	.	.	.	.	.	.
Template Sequence		E	I	R	P	V	V	K	P	Q	Y	V	D	L	I	P	K	A	V	K	G	K	V	I	E	L	L	K	K	A	D	E	.	.	.	.	.	.	.	.	.	T	G	K	L	E	E	V	V	K	A	L	E	L	E	N	V	L	E	R	E	I	Q	H	L	S	G	G	E	L	Q	R	V	A	I	A	A	A	L	L	R
Template Known Secondary structure		S								S		G	G	G	S	G	G	G			S	B										S	.	.	.	.	.	.	.	.	.	S	S									T	T		T	T	T	T	T	S	B	G	G	G																	S
Template Predicted Secondary structure																																	.	.	.	.	.	.	.	.	.
Template SS confidence
		157	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.										.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.
		161	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
Predicted Secondary structure
Query SS confidence
Query Sequence		N	A	K	I	I	A	F	D	E	P	T	S	S	L	S	A	R	E	I	D	N	L	F	R	V	I	R	E	L	R	K	E	G	R	V	I	L	Y	V	S	H	R	M	E	E	I	F	A	L	S	D	A	I	T	V	F	K	D	G	R	Y	V	K	T	F	T	D	M	Q	Q	V	D	H	D	A	L	V	Q	A	M
Query Conservation
Alig confidence
Template Conservation
Template Sequence		N	A	T	F	Y	F	F	D	E	P	S	S	Y	L	D	I	R	Q	R	L	N	A	A	R	A	I	R	R	L	S	E	E	G	K	S	V	L	V	V	E	H	D	L	A	V	L	D	Y	L	S	D	I	I	H	V	V	Y	G	E	P	G	V	Y	G	I	F	S	Q	P	K	G	T	R	N	G	I	N	E	F	L
Template Known Secondary structure				S						S	T	T	T	T																			T	T								S										S									T	T	T
Template Predicted Secondary structure
Template SS confidence
		228	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.
		241	.	.	.	.	.	.	.	.	250	.	.	.	.	.													.	.	.	.	260	.	.	.	.	.	.	.	.	.	270				.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.
Predicted Secondary structure																	.	.	.	.	.	.	.	.	.	.	.	.																.	.	.
Query SS confidence																	.	.	.	.	.	.	.	.	.	.	.	.																.	.	.
Query Sequence		V	G	R	D	I	G	D	I	Y	G	W	Q	P	R	S	.	.	.	.	.	.	.	.	.	.	.	.	Y	G	E	E	R	L	R	L	D	A	V	K	A	P	G	.	.	.	V	R	T	P	I	S	L	A	V	R	S	G	E	I	V	G	L	F	G	L	V	G	A	G	R	S	E	L	M	K	G	M	F	G	G
Query Conservation																	.	.	.	.	.	.	.	.	.	.	.	.																.	.	.
Alig confidence																	.	.	.	.	.	.	.	.	.	.	.	.																.	.	.
Template Conservation
Template Sequence		R	G	Y	L	K	D	E	N	V	R	F	R	P	Y	E	I	K	F	T	K	T	G	E	R	V	E	I	E	R	E	T	L	V	T	Y	P	R	L	V	K	D	Y	G	S	F	R	L	E	V	E	P	G	E	I	K	K	G	E	V	I	G	I	V	G	P	N	G	I	G	K	T	T	F	V	K	X	L	A	G	V
Template Known Secondary structure			T			T	T	T	T				S	S	S							S	S	G	G	G	S	S																T	T												T	T									T	T	S	S										T	S
Template Predicted Secondary structure
Template SS confidence
		308	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.
		306	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	Q	I	T	A	G	Q	V	Y	I	D	Q	Q	P	I	D	I	R	K	P	S	H	A	I	A	A	G	M	M	L	C	P	E	D	R	K	A	E	G	I	I	P	V	H	S	V	R	D	N	I	N	I	S	A	R	R	K	H	V	L	G	G	C	V	I	N	N	G	W	E	E	N	N	A	D	H	H	I	R	S
Query Conservation
Alig confidence															.	.	.	.	.	.	.	.	.	.	.	.	.	.								.	.	.																				.	.	.	.	.	.	.	.	.	.
Template Conservation															.	.	.	.	.	.	.	.	.	.	.	.	.	.								.	.	.																				.	.	.	.	.	.	.	.	.	.
Template Sequence		E	E	P	T	E	G	K	I	E	W	D	L	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	V	A	Y	K	P	Q	Y	.	.	.	I	K	A	D	Y	E	G	T	V	Y	E	L	L	S	K	I	D	A	S	.	.	.	.	.	.	.	.	.	.	K	L	N	S	N	F	Y	K	T	E	L	L	K	P
Template Known Secondary structure		S			S	B									.	.	.	.	.	.	.	.	.	.	.	.	.	.						S	S	.	.	.						S	S	B												.	.	.	.	.	.	.	.	.	.			T								T	T	T	T
Template Predicted Secondary structure															.	.	.	.	.	.	.	.	.	.	.	.	.	.								.	.	.																				.	.	.	.	.	.	.	.	.	.
Template SS confidence
		388	.	390	.	.	.	.	.	.	.	.	.	400															.	.	.	.	.	.	.				.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.											.	.	.	430	.	.	.	.	.	.	.	.	.	440
		386	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.		.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.
Predicted Secondary structure																																																																	.
Query SS confidence																																																																	.
Query Sequence		L	N	I	K	T	P	G	A	E	Q	L	I	M	N	L	S	G	G	N	Q	Q	K	A	I	L	G	R	W	L	S	E	E	M	K	V	I	L	L	D	E	P	T	R	G	I	D	V	G	A	K	H	E	I	Y	N	V	I	Y	A	L	A	A	Q	.	G	V	A	V	L	F	A	S	S	D	L	P	E	V	L	G
Query Conservation																																																																	.
Alig confidence					.																																																												.
Template Conservation					.
Template Sequence		L	G	I	.	I	D	L	Y	D	R	E	V	N	E	L	S	G	G	E	L	Q	R	V	A	I	A	A	T	L	L	R	D	A	D	I	Y	L	L	D	E	P	S	A	Y	L	D	V	E	Q	R	L	A	V	S	R	A	I	R	H	L	X	E	K	N	E	K	T	A	L	V	V	E	H	D	V	L	X	I	D	Y
Template Known Secondary structure		T	T		.	G	G	G	T	T	S	B	G	G	G																T	S			S							T	T	T	T																					T								S
Template Predicted Secondary structure					.
Template SS confidence
		441	.	.		.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.
		465	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	A	D	R	I	V	V	M	R	E	G	E	I	A	G	E	L
Query Conservation
Alig confidence										.
Template Conservation										.
Template Sequence		V	S	D	R	L	X	V	F	.	E	G	E	P	G	K	Y	G
Template Known Secondary structure				S						.				T	T	T
Template Predicted Secondary structure										.
Template SS confidence
		520	.	.	.	.	.	.	.		.	.	530	.	.	.	.	.