Job Description P0AAF3 Confidence 99.96% Date Thu Jan 5 11:12:46 GMT 2012 Rank 60 Aligned Residues 367 % Identity 15% Template c1u9iA_ PDB info PDB header:circadian clock protein Chain: A: PDB Molecule:kaic; PDBTitle: crystal structure of circadian clock protein kaic with phosphorylation2 sites Resolution 2.80 Å

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		30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.			.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.
Predicted Secondary structure																								.	.
Query SS confidence																								.	.
Query Sequence		C	Y	A	G	Q	V	H	A	L	M	G	E	N	G	A	G	K	S	T	L	L	K	.	.	I	L	S	G	N	Y	A	P	T	T	G	S	V	V	I	N	G	Q	E	M	S	F	S	D	T	T	A	A	L	N	A	G	V	A	I	I	Y	Q	E	L	H	L	V	P	E	M	T	V	A	E	N	I	Y	L	G	Q
Query Conservation																								.	.
Alig confidence																								.	.																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.					.	.	.
Template Conservation																																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.					.	.	.
Template Sequence		L	P	I	G	R	S	T	L	V	S	G	T	S	G	T	G	K	T	L	F	S	I	Q	F	L	Y	N	G	I	I	E	F	D	E	P	G	V	F	V	T	F	E	E	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	P	Q	D	I	.	.	.	I
Template Known Secondary structure				T	T	S							S	T	T	S	S																									S	S	S		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.					.	.	.
Template Predicted Secondary structure																																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.					.	.	.
Template SS confidence
		36	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.																													80	.	.	.				.
		108	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.						.	.	.	.	180	.	.
Predicted Secondary structure																																																																						.	.	.	.	.
Query SS confidence																																																																						.	.	.	.	.
Query Sequence		L	P	H	K	G	G	I	V	N	R	S	L	L	N	Y	E	A	G	L	Q	L	K	H	L	G	M	D	I	D	P	D	T	P	L	K	Y	L	S	I	G	Q	W	Q	M	V	E	I	A	K	A	L	A	R	N	A	K	I	I	A	F	D	E	P	T	S	S	L	S	.	.	.	.	.	A	R	E	I	D	N	L
Query Conservation																																																																						.	.	.	.	.
Alig confidence																																																																						.	.	.	.	.
Template Conservation
Template Sequence		K	N	A	R	S	F	G	W	D	L	A	K	L	V	D	E	G	K	L	F	I	L	D	A	S	P	D	P	E	G	Q	E	V	V	G	G	F	D	L	S	A	L	I	E	R	I	N	Y	A	I	Q	K	Y	R	A	R	R	V	S	I	D	S	V	T	S	V	F	Q	Q	Y	D	A	S	S	V	V	R	R	E	L
Template Known Secondary structure					G	G	G	T									T	T	S										S	S			S			S	S																		T		S							S	T	T	T	S	T	T	T
Template Predicted Secondary structure
Template SS confidence
		85	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.
		183	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.			.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260
Predicted Secondary structure																																			.	.
Query SS confidence																																			.	.
Query Sequence		F	R	V	I	R	E	L	R	K	E	G	R	V	I	L	Y	V	S	H	R	M	E	E	I	F	A	L	S	D	A	I	T	V	.	.	F	K	D	G	R	Y	V	K	T	F	T	D	M	Q	Q	V	D	H	D	A	L	V	Q	A	M	V	G	R	D	I	G	D	I	Y	G	W	Q	P	R	S	Y	G	E	E	R
Query Conservation																																			.	.
Alig confidence																																			.	.													.
Template Conservation																																																	.
Template Sequence		F	R	L	V	A	R	L	K	Q	I	G	A	T	T	V	M	T	T	E	R	I	E	E	Y	G	P	I	A	R	Y	G	V	E	E	F	V	S	D	N	V	V	I	L	R	N	V	L	.	E	G	E	R	R	R	R	T	L	E	I	L	K	L	R	G	T	S	H	M	K	G	E	Y	P	F	T	I	T	D	H	G
Template Known Secondary structure												T										S	S	S	S	S		S	S	T	T	S							S										.	S	T	T												T	T	S					S								T	T
Template Predicted Secondary structure																																																	.
Template SS confidence
		165	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.		.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.
		261	.	.	.	.	.	.	.	.	270																	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.
Predicted Secondary structure												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		L	R	L	D	A	V	K	A	P	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	V	R	T	P	I	S	L	A	V	R	S	G	E	I	V	G	L	F	G	L	V	G	A	G	R	S	E	L	M	K	G	M	F	G	G	T	Q	I	T	A	G	Q	V	Y	I	D	Q	Q	P	I	D	I	R	K
Query Conservation												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																														.	.	.	.	.	.	.	.	.
Template Conservation																																																																									.	.	.	.	.	.	.	.	.
Template Sequence		I	N	I	F	P	L	G	A	M	R	L	T	Q	R	S	S	N	V	R	V	S	S	G	V	V	R	L	D	E	M	C	G	G	G	F	F	K	D	S	I	I	L	A	T	G	A	T	G	T	G	K	T	L	L	V	S	R	F	V	E	N	A	C	A	N	K	E	R	A	I	L	.	.	.	.	.	.	.	.	.
Template Known Secondary structure							T	T	T			S												S								T	T	S	S			S	S									T	T	S	S														T	T	T						.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																																																									.	.	.	.	.	.	.	.	.
Template SS confidence
		244	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.
		325	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		P	S	H	A	I	A	A	G	M	M	L	C	P	E	D	R	K	A	E	G	I	I	P	V	H	S	V	R	D	N	I	N	I	S	A	R	R	K	H	V	L	G	G	C	V	I	N	N	G	W	E	E	N	N	A	D	H	H	I	R	S	L	N	I	K	T	P	G	A	E	Q	L	I	M	N	L	S	G	G	N
Query Conservation
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																			.	.	.	.	.	.	.	.	.	.	.	.	.	.													.	.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																			.	.	.	.	.	.	.	.	.	.	.	.	.	.													.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	F	A	Y	E	E	S	R	A	Q	L	L	R	N	A	Y	S	W	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	M	D	F	E	E	M	E	R	Q	N	L	L	.	.	K	I	V	C	A	Y	P	E	S	A	G	L	E	D
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.			S	S	S											T	T	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.									T	T	S		.	.							G	G	G	S
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																			.	.	.	.	.	.	.	.	.	.	.	.	.	.													.	.
Template SS confidence
																						315	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.															.	.	.	.	.	.	.	340	.	.	.	.			.	.	.	.	.	350	.	.	.	.	.	.	.	.
		405	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.					.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.									.	.	460	.	.	.	.	.	.	.	.	.	470	.	.
Predicted Secondary structure																									.	.	.	.																															.	.	.	.	.	.	.	.
Query SS confidence																									.	.	.	.																															.	.	.	.	.	.	.	.
Query Sequence		Q	Q	K	A	I	L	G	R	W	L	S	E	E	M	K	V	I	L	L	D	E	P	T	.	.	.	.	R	G	I	D	V	G	A	K	H	E	I	Y	N	V	I	Y	A	L	A	A	Q	G	V	A	V	L	F	A	S	S	.	.	.	.	.	.	.	.	D	L	P	E	V	L	G	V	A	D	R	I	V	V	M
Query Conservation																									.	.	.	.																															.	.	.	.	.	.	.	.
Alig confidence																									.	.	.	.																															.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		H	L	Q	I	I	K	S	E	I	N	D	F	K	P	A	R	I	A	I	D	S	L	S	A	L	A	R	G	V	S	N	N	A	F	R	Q	F	V	I	G	V	T	G	Y	A	K	Q	E	E	I	T	G	L	F	T	N	T	S	D	Q	F	M	G	A	H	S	I	T	D	S	H	I	I	T	D	T	I	I	L	L
Template Known Secondary structure												T	T			S											T	S	S	S																			T	T										S	S	S	S				S	S		S	S					S
Template Predicted Secondary structure
Template SS confidence
		359	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.
		473
Predicted Secondary structure
Query SS confidence
Query Sequence		R
Query Conservation
Alig confidence
Template Conservation
Template Sequence		Q
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		441