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Job DescriptionP76350
Confidence99.97%DateThu Jan 5 12:22:14 GMT 2012
Rank2Aligned Residues393
% Identity11%Templatec3o7pA_
PDB info PDB header:transport proteinChain: A: PDB Molecule:l-fucose-proton symporter; PDBTitle: crystal structure of the e.coli fucose:proton symporter, fucp (n162a)
Resolution3.20 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   22.......30.........40.........50.........60.........70.........80.........90.........100.
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Query Sequence  RAALGSFAGAVVDWYDFLLYGITAALVFNREFFPQVSPAMGTLAAFATFGVGFLFRPLGGVIFGHFGDRLGRKRMLMLTV
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Template Sequence  RSYIIPFALLCSLFFLWAVANNLNDILLPQFQQAFFQAGL. . . . . . . IQSAFYFGYFIIPIPAGILMKKLSYKAGIITGL
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TTTTT

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Query Sequence  WMMGIATALIGILPSFSTIGWWAPILLVTLRAIQGFAVGGEWGGAALLSVESAPKNKKAFYSSGVQVGYGVGLLLSTGLV
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Template Sequence  FLYALGAALFWPAAEIMN. . . . . YTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFASFGAIIAVVFG
Template Known Secondary structure  TTT
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GGG
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Query Sequence  SLISMMTTDEQFLSWGWRIPFLFSIVLVL. . . . . . . . . . . . . . . . . GALWVRNGMEESAEFEQQQHYQAAAKKRIPVIEA
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Template Conservation    
                                                                             
Template Sequence  QSLILSNVPHQSQDVLDKMSPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIMLTKFPALQSDNHSDAKQGSFSASLSR
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Query Sequence  LLRHPGAFLKIIALRLCELLTMYIVTAFALNYSTQNMGLPRELFLNIGLLVGGLSCLTIPCFAWLADRFGRRRVYITGTL
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Template Sequence  LARIRHWRWAVLAQFCYVGAQTACWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRFAPHKVLAAYAL
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STT

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Query Sequence  IGTLSAFPFFMALEAQSIFWIVFFSIMLANIAHDMVVCVQQPMFTEMFGASYRYSGAGVGYQVASVVGGGFTPFIAAALI
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Template Sequence  IAMALCLISAF. . . . . AGGHVGLIALTLCSAFMSIQYPTIFSLGIKNLGQDTKYGSSFIVMT. . . IIGGGIVTPVMGFVS
Template Known Secondary structure  .....S
TTSS
GGGG...GG
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Query Sequence  TYFAGNWHSVAIYLLAGCLISAMTALLMKDS
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Template Sequence  DAAG. NIPTAELIPALCFAVIFIFARFRSQT
Template Known Secondary structure  T.SSGGGGTS



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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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