Job Description P06720 Confidence 100.00% Date Thu Jan 5 10:59:23 GMT 2012 Rank 27 Aligned Residues 297 % Identity 17% Template c3pqeD_ PDB info PDB header:oxidoreductase Chain: D: PDB Molecule:l-lactate dehydrogenase; PDBTitle: crystal structure of l-lactate dehydrogenase from bacillus subtilis2 with h171c mutation Resolution 2.20 Å

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		3	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	A	P	K	I	T	F	I	G	A	G	S	T	I	F	V	K	N	I	L	G	D	V	F	H	R	E	A	L	K	T	A	H	I	A	L	M	D	I	D	P	T	R	L	E	E	S	H	I	V	V	R	K	L	M	D	S	A	G	A	S	G	K	I	T	C	H	T	Q	Q	K	E	A	L	E	D	A	D	F	V
Query Conservation
Alig confidence																												.	.	.	.																																			.	.
Template Conservation																												.	.	.	.																																			.	.
Template Sequence		H	V	N	K	V	A	L	I	G	A	G	F	V	G	S	S	Y	A	F	A	L	I	N	Q	G	I	.	.	.	.	T	D	E	L	V	V	I	D	V	N	K	E	K	A	M	G	D	V	M	D	L	N	H	G	K	A	F	A	P	Q	P	V	K	T	.	.	S	Y	G	T	Y	E	D	C	K	D	A	D	I	V
Template Known Secondary structure												S														T		.	.	.	.		S							S	S														T	G	G	G	S	S	S					.	.					G	G	G	G	T	T		S
Template Predicted Secondary structure																												.	.	.	.																																			.	.
Template SS confidence
		4	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.					30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.			.	.	.	.	.	.	70	.	.	.	.	.	.	.
		83	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	V	A	F	Q	I	G	G	Y	E	P	C	T	V	T	D	F	E	V	C	K	R	H	G	L	E	Q	T	I	A	D	T	L	G	P	G	G	I	M	R	A	L	R	T	I	P	H	L	W	Q	I	C	E	D	M	T	E	V	C	P	D	A	T	M	L	N	Y	V	N	P	M	A	M	N	T	W	A	M	Y	A
Query Conservation
Alig confidence												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		C	I	C	A	G	A	N	R	L	E	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	L	V	E	K	N	L	K	I	F	K	G	I	V	S	E	V	M	A	S	G	F	D	G	I	F	L	V	A	T	N	P	V	D	I	L	T	Y	A	T	W	K
Template Known Secondary structure						S				T	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																		T	T	T			S						S	S	S
Template Predicted Secondary structure												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		78	.	80	.	.	.	.	.	.	.																														.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.
		163			.	.	.	.	.	.	170	.	.	.	.			.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.
Predicted Secondary structure			.	.												.	.
Query SS confidence			.	.												.	.
Query Sequence		R	.	.	Y	P	H	I	K	Q	V	G	L	C	H	.	.	S	V	Q	G	T	A	E	E	L	A	R	D	L	N	I	D	P	A	T	L	R	Y	R	C	A	G	I	N	H	M	A	F	Y	L	E	L	E	R	K	T	A	D	G	S	Y	V	N	L	Y	P	E	L	L	A	A	Y	E	A	G	Q	A	P	K	P
Query Conservation			.	.												.	.
Alig confidence			.	.												.	.																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		F	S	G	L	P	K	E	R	V	I	G	S	G	T	T	L	D	S	A	R	F	R	F	M	L	S	E	Y	F	G	A	A	P	Q	N	V	C	A	H	I	I	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	E	H	G	D	T	E	L	P
Template Known Secondary structure							G	G	G					T	T													T	T	T	T	S		G	G	G							B	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S	S	S	T	T
Template Predicted Secondary structure																																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		135	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.																															.	.	.	180	.	.	.	.
		239	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		N	I	H	G	N	T	R	C	Q	N	I	V	R	Y	E	M	F	K	K	L	G	Y	F	V	T	E	S	S	E	H	F	A	E	Y	T	P	W	F	I	K	P	G	R	E	D	L	I	E	R	Y	K	V	P	L	D	E	Y	P	K	R	C	V	E	Q	L	A	N	W	H	K	E	L	E	E	Y	K	K	A	S	R
Query Conservation
Alig confidence															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		V	W	S	H	A	N	V	G	G	V	P	V	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	E	L	V	E	K	N	D	Y	K	Q	E	E	L	D	Q	I	V	D	D	V	K	N	A	A	Y	H	I	I	E	K	K	G
Template Known Secondary structure			G	G	G				T	T					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																S
Template Predicted Secondary structure															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		185	.	.	.	.	190	.	.	.	.	.	.	.																																				.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.
		319	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	D	I	K	P	S	R	E	Y	A	S	T	I	M	N	A	I	W	T	G	E	P	S	V	I	Y	G	N	V	R	N	D	G	L	I	D	N	L	P	Q	G	C	C	V	E	V	A	C	L	V	D	A	N	G	I	Q	P	T	K	V	G	T	L	P	S	H	L	A	A	L	M	Q	T	N	I	N	V	Q	T	L
Query Conservation
Alig confidence																																						.	.
Template Conservation																																						.	.
Template Sequence		A	T	Y	Y	G	V	A	M	S	L	A	R	I	T	K	A	I	L	H	N	E	N	S	I	L	T	V	S	T	Y	L	D	G	Q	Y	G	.	.	A	D	D	V	Y	I	G	V	P	A	V	V	N	R	G	G	I	A	G	I	T	E	L	N	L	N	E	K	E	K	E	Q	F	L	H	S	A	G	V	L	K	N
Template Known Secondary structure																				T	T													S	T	T	S	.	.														T	T
Template Predicted Secondary structure																																						.	.
Template SS confidence
		231	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.			.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.
		399	400	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	T	E
Query Conservation
Alig confidence
Template Conservation
Template Sequence		I	L	K
Template Known Secondary structure				G
Template Predicted Secondary structure
Template SS confidence
		309	310	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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