Job Description P06720 Confidence 91.65% Date Thu Jan 5 10:59:23 GMT 2012 Rank 424 Aligned Residues 69 % Identity 14% Template c3l4bG_ PDB info PDB header:transport protein Chain: G: PDB Molecule:trka k+ channel protien tm1088b; PDBTitle: crystal structure of an octomeric two-subunit trka k+ channel ring2 gating assembly, tm1088a:tm1088b, from thermotoga maritima Resolution 3.45 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		6	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.					.	.	.	.	.	.	.	80	.
Predicted Secondary structure																																																																					.	.	.	.
Query SS confidence																																																																					.	.	.	.
Query Sequence		K	I	T	F	I	G	A	G	S	T	I	F	V	K	N	I	L	G	D	V	F	H	R	E	A	L	K	T	A	H	I	A	L	M	D	I	D	P	T	R	L	E	E	S	H	I	V	V	R	K	L	M	D	S	A	G	A	S	G	K	I	T	C	H	T	Q	Q	.	.	.	.	K	E	A	L	E	D	A	D	F
Query Conservation																																																																					.	.	.	.
Alig confidence										.	.														.	.	.	.														.	.	.	.	.	.	.																					.	.	.	.
Template Conservation										.	.														.	.	.	.														.	.	.	.	.	.	.
Template Sequence		K	V	I	I	I	G	G	E	.	.	T	T	A	Y	Y	L	A	R	S	M	L	S	R	.	.	.	.	K	Y	G	V	V	I	I	N	K	D	R	E	L	.	.	.	.	.	.	.	C	E	E	F	A	K	K	L	K	A	T	I	I	H	G	D	G	S	H	K	E	I	L	R	D	A	E	V	S	K	N	D	V
Template Known Secondary structure										.	.													T	.	.	.	.	T								S					.	.	.	.	.	.	.								S	S	S					S		T	T	S								T			T	T
Template Predicted Secondary structure										.	.														.	.	.	.														.	.	.	.	.	.	.
Template SS confidence
		2	.	.	.	.	.	.	.			10	.	.	.	.	.	.	.	.	.	20	.	.					.	.	.	.	.	.	.	30	.	.	.	.	.								.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.
		82	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	V	V	A	F	Q
Query Conservation
Alig confidence
Template Conservation
Template Sequence		V	V	I	L	T	P
Template Known Secondary structure							S
Template Predicted Secondary structure
Template SS confidence
		69	70	.	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions