Return to main results Retrieve Phyre Job Id

Job DescriptionP06720
Confidence92.95%DateThu Jan 5 10:59:23 GMT 2012
Rank401Aligned Residues71
% Identity13%Templatec3donA_
PDB info PDB header:oxidoreductaseChain: A: PDB Molecule:shikimate dehydrogenase; PDBTitle: crystal structure of shikimate dehydrogenase from staphylococcus2 epidermidis
Resolution2.10 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   3......10.........20.........30.........40.........50.........60.........70.........80..
Predicted Secondary structure 



























Query SS confidence 















































































Query Sequence  SAPKITFIGAGSTIFVKNILGDVFHREALKTAHIALMDIDPTRLEESHIVVRKLMDSAGASGKITCHTQQKEALEDADFV
Query Conservation     

 





          
     
   



 


  

                   
  


   

 




Alig confidence 













.....























...........

























Template Conservation    
 







 
..... 

   
   
   
 
 


  
...........
  

              
   


Template Sequence  EDAYILILGAGGAS. . . . . KGIANELYKIVRPTLTVANRTMSR. . . . . . . . . . . FNNWSLNINKINLSHAESHLDEFDII
Template Known Secondary structure  GG



S.....TT

S


S
GGG...........GTT

S


TGGG
S
Template Predicted Secondary structure 




.....





...........







Template SS confidence 















































































   116...120......... 130.........140.........150... ......160.........170.........
 
   83......
Predicted Secondary structure 




Query SS confidence 






Query Sequence  VVAFQIG
Query Conservation 
 
 


Alig confidence 






Template Conservation 




 
Template Sequence  INTTPDS
Template Known Secondary structure 




Template Predicted Secondary structure 





Template SS confidence 






   180......
 
Download:Text version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions