 |
Job Description | P06720 | Confidence | 95.64% | Date | Thu Jan 5 10:59:23 GMT 2012 |
Rank | 286 | Aligned Residues | 66 |
% Identity | 21% | Template | c3c1aB_ |
PDB info |
PDB header:oxidoreductase | Chain: B: PDB Molecule:putative oxidoreductase; |
PDBTitle: crystal structure of a putative oxidoreductase (zp_00056571.1) from2 magnetospirillum magnetotacticum ms-1 at 1.85 a resolution
|
Resolution | 1.85 Å |
|
 |
  |   |
3 | . | . | . | . | . | . | 10 | . | . | . | . | . | . | . | . | . | 20 | . | . | . | . | . | . | . | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60 | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . | . | |
|
80 |
Predicted Secondary structure |   |
|
|
|  |  |  |  |  |
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|
|  |  |  |  |  |  |
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |
|
|
|  |  |  |  |  |
|
|
| . | . |
|
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
|
Query Sequence |   |
S | A | P | K | I | T | F | I | G | A | G | S | T | I | F | V | K | N | I | L | G | D | V | F | H | R | E | A | L | K | T | A | H | I | A | L | M | D | I | D | P | T | R | L | E | E | S | H | I | V | V | R | K | L | M | D | S | A | G | A | S | G | K | I | T | C | H | T | Q | Q | K | E | A | L | E | D | A | . |
. |
D |
Query Conservation |   |
  |   |   |
|
|   |
|
|
|
|
|
|   |   |   |   |   |   |   |   |   |   |
|   |   |   |   |   |
|   |   |   |
|
|
|
|   |
|
|
|   |   |
|
|   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
|   |   |
|
|
|   |   |   |
|
|   |
|
| . | . |
|
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . |
|
|
|
|
|
|
|
|
|
|
| . | . |
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . | . | . | . | . | . | . |
|
|
|
|
|
|
|
|
| . | . |
|
|
|
|
|
|
|
|
|
|
| . | . |
|
Template Conservation |   |
  |
|
|
|
|   |
|
|
|   |
|   |   |
|   |   | . | . |
|   |   |   |   |   |   |   |   |   |   | . | . |   |
|
|
|
|   |
|   |   |   |   |   |   | . | . | . | . | . | . | . | . | . | . | . |   |   |   |   |   |   |   |   |   | . | . |   |   |   |   |   |
|
|
|   |   |   |   |   |
|
Template Sequence |   |
S | P | V | R | L | A | L | I | G | A | G | R | W | G | K | N | . |
. |
Y | I | R | T | I | A | G | L | P | G | A | . |
. |
A | L | V | R | L | A | S | S | N | P | D | N | L | . |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
A | L | V | P | P | G | C | V | I | . |
. |
E | S | D | W | R | S | V | V | S | A | P | E | V | E |
Template Known Secondary structure |   |
|
|  |  |  |  |  |  |  |
| T | T | T | T |
| S | . | . |  |  |  |  |  |  | T |
| T | T |  | . | . |  |  |  |  |  |  |  | S |
|  |  |  |  | . | . | . | . | . | . | . | . | . | . | . | T | T |
|
| T | T |
|  |  | . | . |  | S |
|  |  |  |  |  | T |
| S | S |
|
|
Template Predicted Secondary structure |   |
|
|  |  |  |  |  |  |
|
|
|  |  |  |  |  | . | . |  |  |  |  |  |  |  |
|
|
|
| . | . |  |  |  |  |  |  |
|
|
|  |  |  |  | . | . | . | . | . | . | . | . | . | . | . |  |  |  |  |
|
|
|
|  | . | . |  |
|
|  |  |  |  |  |
|
|
|
|
|
|
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
8 | . | 10 | . | . | . | . | . | . | . | . | . | 20 | . | . | . | |
|
. | . | . | . | . | . | 30 | . | . | . | . | |
|
. | . | . | . | . | 40 | . | . | . | . | . | . | . | |
|
|
|
|
|
|
|
|
|
|
. | . | 50 | . | . | . | . | . | . | |
|
. | . | . | 60 | . | . | . | . | . | . | . | . | . | 70 |
  |
  |   |
81 | . | . | . | . |
Predicted Secondary structure |   |
 |  |  |  |
|
Query SS confidence |   |
|
|
|
|
|
Query Sequence |   |
F | V | V | V | A |
Query Conservation |   |
|
|
|   |
|
Alig confidence |   |
|
|
|
|
|
Template Conservation |   |
  |
|   |
|   |
Template Sequence |   |
A | V | I | I | A |
Template Known Secondary structure |   |
 |  |  |  |  |
Template Predicted Secondary structure |   |
 |  |  |  |
|
Template SS confidence |   |
|
|
|
|
|
  |   |
71 | . | . | . | . |
  |
No model constructed - rank, confidence too low
Phyre is for academic use only
Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
  |
|
|