 |
Job Description | P06720 | Confidence | 96.39% | Date | Thu Jan 5 10:59:23 GMT 2012 |
Rank | 241 | Aligned Residues | 73 |
% Identity | 15% | Template | c1vlvA_ |
PDB info |
PDB header:transferase | Chain: A: PDB Molecule:ornithine carbamoyltransferase; |
PDBTitle: crystal structure of ornithine carbamoyltransferase (tm1097) from2 thermotoga maritima at 2.25 a resolution
|
Resolution | 2.25 Å |
|
 |
  |   |
3 | . | . | . | . | . | . | 10 | . | . | . | . | . | . | . | . | . | 20 | . | . | . | . | . | . | . | . | . | 30 | . | . | . | . | . | . | . | . | |
|
|
|
|
. | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60 | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . |
Predicted Secondary structure |   |
|
|
|  |  |  |  |  |
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|
|  |  |  |  | . | . | . | . | . |  |  |
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |
|
|
|  |  |  |  |  |
|
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
. |
. |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
S | A | P | K | I | T | F | I | G | A | G | S | T | I | F | V | K | N | I | L | G | D | V | F | H | R | E | A | L | K | T | A | H | I | A | L | . |
. |
. |
. |
. |
M | D | I | D | P | T | R | L | E | E | S | H | I | V | V | R | K | L | M | D | S | A | G | A | S | G | K | I | T | C | H | T | Q | Q | K | E | A | L | E |
Query Conservation |   |
  |   |   |
|
|   |
|
|
|
|
|
|   |   |   |   |   |   |   |   |   |   |
|   |   |   |   |   |
|   |   |   |
|
|
|
| . | . | . | . | . |   |
|
|
|   |   |
|
|   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
|   |   |
|
|
|   |   |   |
|
|   |
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . |
|
|
|
|
|
| . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
  |
|
|   |
|   |   |
|
|
|   |   |   |   |
|   |   |
|   |   |   |   |   |   |   |   | . | . | . | . |
|   |   |
|   |   |   |   |
|   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   | . | . | . | . | . | . |
|   |   |
|   |   |   |   |   |   |   |   |
|   |   |
Template Sequence |   |
K | G | V | K | V | V | F | M | G | D | T | R | N | N | V | A | T | S | L | M | I | A | C | A | K | M | . |
. |
. |
. |
G | M | N | F | V | A | C | G | P | E | E | L | K | P | R | S | D | V | F | K | R | C | Q | E | I | V | K | E | T | . |
. |
. |
. |
. |
. |
D | G | S | V | S | F | T | S | N | L | E | E | A | L | A |
Template Known Secondary structure |   |
T | T |
|  |  |  |  |  | S |
| T | T | S |  |  |  |  |  |  |  |  |  |  |  |  | T | . | . | . | . | T |
|  |  |  |  |  | S |
| G | G | G |
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . | . | . | . | . |
|
|  |  |  |  |  | S |
|  |  |  |  |  | T |
Template Predicted Secondary structure |   |
|
|
|  |  |  |  |  |
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |
| . | . | . | . |
|
|  |  |  |  |  |
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |
| . | . | . | . | . | . |
|
|  |  |  |  |  |  |
|  |  |  |  |  |
|
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
154 | . | . | . | . | . | 160 | . | . | . | . | . | . | . | . | . | 170 | . | . | . | . | . | . | . | . | . | |
|
|
|
180 | . | . | . | . | . | . | . | . | . | 190 | . | . | . | . | . | . | . | . | . | 200 | . | . | . | . | . | . | . | . | |
|
|
|
|
|
. | 210 | . | . | . | . | . | . | . | . | . | 220 | . | . | . |
  |
  |   |
78 | . | 80 | . | . | . | . | . |
Predicted Secondary structure |   |
|
|
|  |  |  |  |
|
Query SS confidence |   |
|
|
|
|
|
|
|
|
Query Sequence |   |
D | A | D | F | V | V | V | A |
Query Conservation |   |
|
|
|
|
|
|   |
|
Alig confidence |   |
|
|
|
|
|
|
|
|
Template Conservation |   |
  |
|
|
|
|
|
|   |
Template Sequence |   |
G | A | D | V | V | Y | T | D |
Template Known Secondary structure |   |
T |
| S |  |  |  |  |
|
Template Predicted Secondary structure |   |
|
|
|  |  |  |  |
|
Template SS confidence |   |
|
|
|
|
|
|
|
|
  |   |
224 | . | . | . | . | . | 230 | . |
  |
No model constructed - rank, confidence too low
Phyre is for academic use only
Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
  |
|
|