Job Description P06720 Confidence 100.00% Date Thu Jan 5 10:59:23 GMT 2012 Rank 3 Aligned Residues 433 % Identity 23% Template c1vjtA_ PDB info PDB header:hydrolase Chain: A: PDB Molecule:alpha-glucosidase; PDBTitle: crystal structure of alpha-glucosidase (tm0752) from thermotoga2 maritima at 2.50 a resolution Resolution 2.50 Å

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		5	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.			.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.
Predicted Secondary structure																														.	.
Query SS confidence																														.	.
Query Sequence		P	K	I	T	F	I	G	A	G	S	T	I	F	V	K	N	I	L	G	D	V	F	H	R	E	A	L	K	.	.	T	A	H	I	A	L	M	D	I	D	P	T	R	L	E	E	S	H	I	V	V	R	K	L	M	D	S	A	G	A	S	G	K	I	T	C	H	T	Q	Q	K	E	A	L	E	D	A	D	F	V
Query Conservation																														.	.
Alig confidence																														.	.
Template Conservation
Template Sequence		X	K	I	S	I	I	G	A	G	S	V	R	F	A	L	Q	L	V	G	D	I	A	Q	T	E	E	L	S	R	E	D	T	H	I	Y	X	X	D	V	H	E	R	R	L	N	A	S	Y	I	L	A	R	K	Y	V	E	E	L	N	S	P	V	K	I	V	K	T	S	S	L	D	E	A	I	D	G	A	D	F	I
Template Known Secondary structure								T	T	T	S														S	T	T	T		S	T	T								S																				T									S							T	T		S
Template Predicted Secondary structure
Template SS confidence
		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80
		83	.	.	.	.	.								.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.			.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.				.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150
Predicted Secondary structure								.	.	.	.	.	.	.																								.	.																		.	.	.
Query SS confidence								.	.	.	.	.	.	.																								.	.																		.	.	.
Query Sequence		V	V	A	F	Q	I	.	.	.	.	.	.	.	G	G	Y	E	P	C	T	V	T	D	F	E	V	C	K	R	H	G	L	E	Q	T	I	.	.	A	D	T	L	G	P	G	G	I	M	R	A	L	R	T	I	P	.	.	.	H	L	W	Q	I	C	E	D	M	T	E	V	C	P	D	A	T	M	L	N	Y	V
Query Conservation								.	.	.	.	.	.	.																								.	.																		.	.	.
Alig confidence								.	.	.	.	.	.	.					.																			.	.																		.	.	.
Template Conservation																			.
Template Sequence		I	N	T	A	Y	P	Y	D	P	R	Y	H	D	S	G	S	Q	.	R	W	D	E	V	T	K	V	G	E	K	H	G	Y	Y	R	G	I	D	S	Q	E	L	N	X	V	S	T	Y	T	Y	V	L	S	S	Y	P	D	X	K	L	A	L	E	I	A	E	K	X	K	K	X	A	P	K	A	Y	L	X	Q	T	A
Template Known Secondary structure										T	T	T		S	S				.												T	T		T	T		T	T		B	T	T	B			T	T	S		S	T	T	T																				T	T							S
Template Predicted Secondary structure																			.
Template SS confidence
		81	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.		.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.
		151	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230
Predicted Secondary structure
Query SS confidence
Query Sequence		N	P	M	A	M	N	T	W	A	M	Y	A	R	Y	P	H	I	K	Q	V	G	L	C	H	S	V	Q	G	T	A	E	E	L	A	R	D	L	N	I	D	P	A	T	L	R	Y	R	C	A	G	I	N	H	M	A	F	Y	L	E	L	E	R	K	T	A	D	G	S	Y	V	N	L	Y	P	E	L	L	A	A	Y
Query Conservation
Alig confidence															.																		.																																			.	.	.	.	.
Template Conservation															.																		.																																			.	.	.	.	.
Template Sequence		N	P	V	F	E	I	T	Q	A	V	R	R	W	.	T	G	A	N	I	V	G	F	C	H	G	V	A	G	V	Y	E	.	V	F	E	K	L	D	L	D	P	E	E	V	D	W	Q	V	A	G	V	N	H	G	I	W	L	N	R	F	R	Y	R	G	E	D	.	.	.	.	.	A	Y	P	L	L	D	E	W	I
Template Known Secondary structure		S													.	S										G	G	G	G				.					T	T			G	G	G									T	T										T	T			.	.	.	.	.
Template Predicted Secondary structure															.																		.																																			.	.	.	.	.
Template SS confidence
		160	.	.	.	.	.	.	.	.	.	170	.	.		.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.		190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.						.	.	.	.	.	.	230	.	.
		231	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.									.	.	.	.	.	.	.	.	300	.	.
Predicted Secondary structure																																																															.	.	.	.	.	.	.	.
Query SS confidence																																																															.	.	.	.	.	.	.	.
Query Sequence		E	A	G	Q	A	P	K	P	N	I	H	G	N	T	R	C	Q	N	I	V	R	Y	E	M	F	K	K	L	G	Y	F	V	T	E	S	S	E	H	F	A	E	Y	T	P	W	F	I	K	P	G	R	E	D	L	I	E	R	Y	K	V	P	.	.	.	.	.	.	.	.	L	D	E	Y	P	K	R	C	V	E	Q
Query Conservation																																																															.	.	.	.	.	.	.	.
Alig confidence																																																															.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		E	K	K	L	P	E	W	E	P	K	N	P	W	D	T	Q	X	S	P	A	A	X	D	X	Y	K	F	Y	G	X	L	P	I	G	D	T	V	R	N	G	S	W	K	Y	H	Y	N	L	E	T	K	K	K	W	F	G	K	F	G	G	I	D	N	E	V	E	R	P	K	F	H	E	Q	L	R	R	A	R	E	R
Template Known Secondary structure				T	G	G	G				S	S	T	T			T	T	S											S	S				G	G	G	T	T	S			G	G	G	T	S	S										T	T			S	S	S	T	T
Template Predicted Secondary structure
Template SS confidence
		233	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.
		303	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.									.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.
Predicted Secondary structure																							.	.	.	.	.	.	.	.
Query SS confidence																							.	.	.	.	.	.	.	.
Query Sequence		L	A	N	W	H	K	E	L	E	E	Y	K	K	A	S	R	I	D	I	K	P	.	.	.	.	.	.	.	.	S	R	E	Y	A	S	T	I	M	N	A	I	W	T	G	E	P	S	V	I	Y	G	N	V	R	N	D	G	L	I	D	N	L	P	Q	G	C	C	V	E	V	A	C	L	V	D	A	N	G	I	Q
Query Conservation																							.	.	.	.	.	.	.	.
Alig confidence																							.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		L	I	K	L	A	E	E	V	Q	Q	N	P	G	X	K	L	T	E	E	H	P	E	I	F	P	K	G	K	L	S	G	E	Q	H	I	P	F	I	N	A	I	A	N	N	K	R	V	R	L	F	L	N	V	E	N	Q	G	T	L	K	D	F	P	D	D	V	V	X	E	L	P	V	W	V	D	C	C	G	I	H
Template Known Secondary structure													T	T								T	T	T	S		S	S						S																							T	T	S	S	T	T	S		S	S	S										T	T
Template Predicted Secondary structure
Template SS confidence
		313	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.
		375	.	.	.	.	380	.	.	.	.	.	.	.	.			.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440			.	.	.	.	.	.	.	.
Predicted Secondary structure																.	.																																																					.	.
Query SS confidence																.	.																																																					.	.
Query Sequence		P	T	K	V	G	T	L	P	S	H	L	A	A	L	.	.	M	Q	T	N	I	N	V	Q	T	L	L	T	E	A	I	L	T	E	N	R	D	R	V	Y	H	A	A	M	M	D	P	H	T	A	A	V	L	G	I	D	E	I	Y	A	L	V	D	D	L	I	A	A	.	.	H	G	D	W	L	P	G	W
Query Conservation																.	.																																																					.	.
Alig confidence																.	.																																					.	.	.														.	.
Template Conservation																																																						.	.	.
Template Sequence		R	E	K	V	E	P	D	L	T	H	R	I	K	I	F	Y	L	W	P	R	I	L	R	X	E	W	N	L	E	A	Y	I	S	R	D	R	K	V	L	E	E	I	L	I	R	D	P	R	T	K	S	Y	.	.	.	E	Q	I	V	Q	V	L	D	E	I	F	N	L	P	F	N	E	E	L	R	R	Y	Y
Template Known Secondary structure							S										T																		T											T		T	T					.	.	.												T	S	G	G	G							T
Template Predicted Secondary structure																																																						.	.	.
Template SS confidence
		393	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.				.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.