Job Description P06720 Confidence 100.00% Date Thu Jan 5 10:59:23 GMT 2012 Rank 33 Aligned Residues 294 % Identity 16% Template c1ur5C_ PDB info PDB header:oxidoreductase Chain: C: PDB Molecule:malate dehydrogenase; PDBTitle: stabilization of a tetrameric malate dehydrogenase by2 introduction of a disulfide bridge at the dimer/dimer3 interface Resolution 1.75 Å

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		4	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	P	K	I	T	F	I	G	A	G	S	T	I	F	V	K	N	I	L	G	D	V	F	H	R	E	A	L	K	T	A	H	I	A	L	M	D	I	D	P	T	R	L	E	E	S	H	I	V	V	R	K	L	M	D	S	A	G	A	S	G	K	I	T	C	H	T	Q	Q	K	E	A	L	E	D	A	D	F	V	V
Query Conservation
Alig confidence																										.	.	.	.	.																																											.
Template Conservation																										.	.	.	.	.																																											.
Template Sequence		R	K	K	I	S	I	I	G	A	G	F	V	G	S	T	T	A	H	W	L	A	A	K	E	.	.	.	.	.	L	G	D	I	V	L	L	D	I	V	E	G	V	P	Q	G	K	A	L	D	L	Y	E	A	S	P	I	E	G	F	D	V	R	V	T	G	T	N	N	Y	A	D	.	T	A	N	S	D	V	I	V
Template Known Secondary structure											S													T	T	.	.	.	.	.		S							S	S	T	T											T	T					T									S		G	G	G	.	G	T	T		S
Template Predicted Secondary structure																										.	.	.	.	.																																											.
Template SS confidence
		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.						.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.		.	.	70	.	.	.	.	.
		84	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	A	F	Q	I	G	G	Y	E	P	C	T	V	T	D	F	E	V	C	K	R	H	G	L	E	Q	T	I	A	D	T	L	G	P	G	G	I	M	R	A	L	R	T	I	P	H	L	W	Q	I	C	E	D	M	T	E	V	C	P	D	A	T	M	L	N	Y	V	N	P	M	A	M	N	T	W	A	M	Y	A	R
Query Conservation
Alig confidence						.	.	.	.	.	.	.					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation						.	.	.	.	.	.	.					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		V	T	S	G	.	.	.	.	.	.	.	A	R	E	D	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	L	I	K	V	N	A	D	I	T	R	A	C	I	S	Q	A	A	P	L	S	P	N	A	V	I	I	M	V	N	N	P	L	D	A	M	T	Y	L	A	A	E	V
Template Known Secondary structure						.	.	.	.	.	.	.					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																	G	G	G		T	T								S	S
Template Predicted Secondary structure						.	.	.	.	.	.	.					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		76	.	.	.								80	.	.	.																								.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.
				164	.	.	.	.	.	170	.	.	.	.			.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.
Predicted Secondary structure		.	.												.	.
Query SS confidence		.	.												.	.
Query Sequence		.	.	Y	P	H	I	K	Q	V	G	L	C	H	.	.	S	V	Q	G	T	A	E	E	L	A	R	D	L	N	I	D	P	A	T	L	R	Y	R	C	A	G	I	N	H	M	A	F	Y	L	E	L	E	R	K	T	A	D	G	S	Y	V	N	L	Y	P	E	L	L	A	A	Y	E	A	G	Q	A	P	K	P	N
Query Conservation		.	.												.	.
Alig confidence		.	.												.	.																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		S	G	F	P	K	E	R	V	I	G	Q	A	G	V	L	D	A	A	R	Y	R	T	F	I	A	M	E	A	G	V	S	V	E	D	V	Q	A	M	L	M	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	H	G	D	E	M	V	P	L
Template Known Secondary structure						G	G	G					S																	T			G	G	G								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.		S	G	G	G
Template Predicted Secondary structure																																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		133	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.																															.	.	.	.	.	.	180	.	.
		240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.			.	.
Predicted Secondary structure																																																																														.	.
Query SS confidence																																																																														.	.
Query Sequence		I	H	G	N	T	R	C	Q	N	I	V	R	Y	E	M	F	K	K	L	G	Y	F	V	T	E	S	S	E	H	F	A	E	Y	T	P	W	F	I	K	P	G	R	E	D	L	I	E	R	Y	K	V	P	L	D	E	Y	P	K	R	C	V	E	Q	L	A	N	W	H	K	E	L	E	E	Y	K	K	.	.	A	S
Query Conservation																																																																														.	.
Alig confidence														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																									.	.
Template Conservation														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		P	R	F	S	C	I	S	G	I	P	V	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	E	F	I	A	P	D	R	L	A	Q	I	V	E	R	T	R	K	G	G	G	E	I	V	N	L	L	K	T
Template Known Secondary structure		G	G	G				T	T			G	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	T	S														T										S	S
Template Predicted Secondary structure														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		183	.	.	.	.	.	.	190	.	.	.	.																																									.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.
		318	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	I	D	I	K	P	S	R	E	Y	A	S	T	I	M	N	A	I	W	T	G	E	P	S	V	I	Y	G	N	V	R	N	D	G	L	I	D	N	L	P	Q	G	C	C	V	E	V	A	C	L	V	D	A	N	G	I	Q	P	T	K	V	G	T	L	P	S	H	L	A	A	L	M	Q	T	N	I	N	V	Q	T
Query Conservation
Alig confidence																																							.	.
Template Conservation																																							.	.
Template Sequence		G	S	A	Y	Y	A	P	A	A	A	T	A	Q	M	V	E	A	V	L	K	D	K	K	R	V	M	P	V	A	A	Y	L	T	G	Q	Y	G	.	.	L	N	D	I	Y	F	G	V	P	V	I	L	G	A	G	G	V	E	K	I	L	E	L	P	L	N	E	E	E	M	A	L	L	N	A	S	A	K	A	V	R
Template Known Secondary structure																					T	T													S	G	G	G	.	.														T	T
Template Predicted Secondary structure																																							.	.
Template SS confidence
		223	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.			260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300
		398	.	400	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	L	T	E	A	I	L	T
Query Conservation
Alig confidence
Template Conservation
Template Sequence		A	T	L	D	T	L	K	S
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		301	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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