Job Description P06720 Confidence 100.00% Date Thu Jan 5 10:59:23 GMT 2012 Rank 36 Aligned Residues 303 % Identity 15% Template c1hygA_ PDB info PDB header:oxidoreductase Chain: A: PDB Molecule:l-lactate/malate dehydrogenase; PDBTitle: crystal structure of mj0490 gene product, the family of2 lactate/malate dehydrogenase Resolution 2.80 Å

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		6	.	.	.	10	.	.		.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.			.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.		.	.	.	70	.	.	.	.	.	.	.	.	.	80	.
Predicted Secondary structure									.																																	.	.																							.
Query SS confidence									.																																	.	.																							.
Query Sequence		K	I	T	F	I	G	A	.	G	S	T	I	F	V	K	N	I	L	G	D	V	F	H	R	E	A	L	K	T	A	H	I	A	L	M	D	I	D	P	T	.	.	R	L	E	E	S	H	I	V	V	R	K	L	M	D	S	A	G	A	S	G	K	I	.	T	C	H	T	Q	Q	K	E	A	L	E	D	A	D	F
Query Conservation									.																																	.	.																							.
Alig confidence									.																	.	.	.	.													.	.																							.
Template Conservation																										.	.	.	.
Template Sequence		K	V	T	I	I	G	A	S	G	R	V	G	S	A	T	A	L	L	L	A	K	E	P	F	.	.	.	.	M	K	D	L	V	L	I	G	R	E	H	S	I	N	K	L	E	G	L	R	E	D	I	Y	D	A	L	A	G	T	R	S	D	A	N	I	Y	V	E	S	D	E	N	L	R	I	I	D	E	S	D	V
Template Known Secondary structure							T	T	T	S													S	T	T	.	.	.	.										G	G	G																T	T	S											T	T		G	G	G	G	T	T		S
Template Predicted Secondary structure																										.	.	.	.
Template SS confidence
		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.					.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.
		82	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	V	V	A	F	Q	I	G	G	Y	E	P	C	T	V	T	D	F	E	V	C	K	R	H	G	L	E	Q	T	I	A	D	T	L	G	P	G	G	I	M	R	A	L	R	T	I	P	H	L	W	Q	I	C	E	D	M	T	E	V	C	P	D	A	T	M	L	N	Y	V	N	P	M	A	M	N	T	W	A	M	Y
Query Conservation
Alig confidence																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																											.
Template Conservation																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																											.
Template Sequence		V	I	I	T	S	G	V	P	R	K	E	G	M	S	R	M	D	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	L	A	K	T	N	A	K	I	V	G	K	Y	A	K	K	I	A	E	I	C	D	T	K	I	F	V	.	I	T	N	P	V	D	V	M	T	Y	K	A	L
Template Known Secondary structure												S	S						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																											.		S	S	S
Template Predicted Secondary structure																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																											.
Template SS confidence
		78	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.																								.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120		.	.	.	.	.	.	.	.	.	130	.	.	.
		162	.			.	.	.	.	.	.	170	.	.	.	.			.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.
Predicted Secondary structure				.	.												.	.
Query SS confidence				.	.												.	.
Query Sequence		A	R	.	.	Y	P	H	I	K	Q	V	G	L	C	H	.	.	S	V	Q	G	T	A	E	E	L	A	R	D	L	N	I	D	P	A	T	L	R	Y	R	C	A	G	I	N	H	M	A	F	Y	L	E	L	E	R	K	T	A	D	G	S	Y	V	N	L	Y	P	E	L	L	A	A	Y	E	A	G	Q	A	P	K
Query Conservation				.	.												.	.
Alig confidence				.	.												.	.																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		V	D	S	K	F	E	R	N	Q	V	F	G	L	G	T	H	L	D	S	L	R	F	K	V	A	I	A	K	F	F	G	V	H	I	D	E	V	R	T	R	I	I	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	E	H	G	D	S	M	V
Template Known Secondary structure					T			T	T	T					T	T																T			G	G	G							B	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.		S	S	T	T
Template Predicted Secondary structure																																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		134	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.																															.	.	.	180	.	.	.
		238	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		P	N	I	H	G	N	T	R	C	Q	N	I	V	R	Y	E	M	F	K	K	L	G	Y	F	V	T	E	S	S	E	H	F	A	E	Y	T	P	W	F	I	K	P	G	R	E	D	L	I	E	R	Y	K	V	P	L	D	E	Y	P	K	R	C	V	E	Q	L	A	N	W	H	K	E	L	E	E	Y	K	K	A	S
Query Conservation
Alig confidence																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		P	L	L	S	A	T	S	I	G	G	I	P	I	Q	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	K	F	E	R	F	K	E	L	P	I	D	E	I	I	E	D	V	K	T	K	G	E	Q	I	I	R	L	K
Template Known Secondary structure				G	G	G				T	T			G	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G		G	G	G	G	G												T		T					T	T	S
Template Predicted Secondary structure																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		184	.	.	.	.	.	190	.	.	.	.	.	.	.																																							.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.
		318	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	I	D	I	K	P	S	R	E	Y	A	S	T	I	M	N	A	I	W	T	G	E	P	S	V	I	Y	G	N	V	R	N	D	G	L	I	D	N	L	P	Q	G	C	C	V	E	V	A	C	L	V	D	A	N	G	I	Q	P	T	K	V	G	T	L	P	S	H	L	A	A	L	M	Q	T	N	I	N	V	Q	T
Query Conservation
Alig confidence																																								.
Template Conservation																																								.
Template Sequence		G	G	S	E	F	G	P	A	A	A	I	L	N	V	V	R	C	I	V	N	N	E	K	R	L	L	T	L	S	A	Y	V	D	G	E	F	D	G	.	I	R	D	V	C	I	G	V	P	V	K	I	G	R	D	G	I	E	E	V	V	S	I	E	L	D	K	D	E	I	I	A	F	R	K	S	A	E	I	I	K
Template Known Secondary structure		S	S		S																T	T			B									S	S	S	B	T	T	.	B		S											T	T
Template Predicted Secondary structure																																								.
Template SS confidence
		226	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.		.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.
		398	.	400	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	L	T	E	A	I	L	T
Query Conservation
Alig confidence
Template Conservation
Template Sequence		K	Y	C	E	E	V	K	N
Template Known Secondary structure									T
Template Predicted Secondary structure
Template SS confidence
		305	.	.	.	.	310	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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