Return to main results Retrieve Phyre Job Id

Job DescriptionP06720
Confidence100.00%DateThu Jan 5 10:59:23 GMT 2012
Rank23Aligned Residues306
% Identity15%Templatec1a5zA_
PDB info PDB header:oxidoreductaseChain: A: PDB Molecule:l-lactate dehydrogenase; PDBTitle: lactate dehydrogenase from thermotoga maritima (tmldh)
Resolution2.10 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   6...10.........20.........30.........40.........50.........60.........70.........80.....
Predicted Secondary structure 

























Query SS confidence 















































































Query Sequence  KITFIGAGSTIFVKNILGDVFHREALKTAHIALMDIDPTRLEESHIVVRKLMDSAGASGKITCHTQQKEALEDADFVVVA
Query Conservation 

 





          
     
   



 


  

                   
  


   

 





 
Alig confidence 






















....




























...




















Template Conservation 

 




 

   
  
     ....  

 
 

        
 

        ...          

  





 
Template Sequence  KIGIVGLGRVGSSTAFALLMKGF. . . . AREMVLIDVDKKRAEGDALDLIHGTPFTR. . . RANIYAGDYADLKGSDVVIVA
Template Known Secondary structure 

ST
....
S
SSGGGS
...



GGGGTT
S
Template Predicted Secondary structure 





....







...







Template SS confidence 















































































   23......30.........40..... ....50.........60.........70.... .....80.........90.....
 
   86...90.........100.........110.........120.........130.........140.........150.........160...
Predicted Secondary structure 



























..
Query SS confidence 













































































. .
Query Sequence  FQIGGYEPCTVTDFEVCKRHGLEQTIADTLGPGGIMRALRTIPHLWQICEDMTEVCPDATMLNYVNPMAMNTWAMYAR. .
Query Conservation   



    
  

 

 
 
  
   

 
 

   
 




   

  
   

 




 


  


 

   ..
Alig confidence 












.......................









































..
Template Conservation   
     
  
  .......................    
  
   
   
    
 
 

  


    
       
Template Sequence  AGVPQKPGETRLQ. . . . . . . . . . . . . . . . . . . . . . . LLGRNARVMKEIARNVSKYAPDSIVIVVTNPVDVLTYFFLKESG
Template Known Secondary structure 





SS

.......................
TT

SSST
Template Predicted Secondary structure 








.......................







Template SS confidence 















































































   98.100.........110 .........120.........130.........140.........150....
 
   164.....170.... .....180.........190.........200.........210.........220.........230.........240.
Predicted Secondary structure 






..



























Query SS confidence 










. .


































































Query Sequence  YPHIKQVGLCH. . SVQGTAEELARDLNIDPATLRYRCAGINHMAFYLELERKTADGSYVNLYPELLAAYEAGQAPKPNIH
Query Conservation      





 ..        

  


    
     



  
       
 
         
               
Alig confidence 










..

























..............................










Template Conservation      



  
 

  
    

  
 
    
   
 
.............................. 

    
  
Template Sequence  MDPRKVFGSGTVLDTARLRTLIAQHCGFSPRSVHVYVIG. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . EHGDSEVPVWS
Template Known Secondary structure 

TTT
TTT

GGG

B..............................
SSTT

GG
Template Predicted Secondary structure 







..............................





Template SS confidence 















































































   155....160.........170.........180.........190... ......200....
 
   242.......250.........260.........270.........280.........290.........300.........310.........320.
Predicted Secondary structure 




















Query SS confidence 















































































Query Sequence  GNTRCQNIVRYEMFKKLGYFVTESSEHFAEYTPWFIKPGREDLIERYKVPLDEYPKRCVEQLANWHKELEEYKKASRIDI
Query Conservation                   
           

                            
                    
Alig confidence 









..................................



































Template Conservation     
 
 
  ..................................                
          
   

   
Template Sequence  GAMIGGIPLQ. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . NMCQVCQKCDSKILENFAEKTKRAAYEIIERKGATH
Template Known Secondary structure  G
TT..................................TTSSS

S


Template Predicted Secondary structure 

..................................












Template SS confidence 















































































   205....210.... .....220.........230.........240.........250
 
   322.......330.........340.........350.........360.........370.........380.........390.........400.
Predicted Secondary structure 


























Query SS confidence 















































































Query Sequence  KPSREYASTIMNAIWTGEPSVIYGNVRNDGLIDNLPQGCCVEVACLVDANGIQPTKVGTLPSHLAALMQTNINVQTLLTE
Query Conservation      
 
  

 

  
      


 
 
 
  

 
 




  
   

 
     

     

      
 
 

Alig confidence 
































..












































Template Conservation   
 
 
   

 

           
   
   ..      
 
  

  

     
 
   
   
  
   
     
Template Sequence  YAIALAVADIVESIFFDEKRVLTLSVYLEDYLG. . VKDLCISVPVTLGKHGVERILELNLNEEELEAFRKSASILKNAIN
Template Known Secondary structure  TT

SSBTT..B
STT





Template Predicted Secondary structure 









..












Template SS confidence 















































































   248.250.........260.........270.........280 .........290.........300.........310.........320.....
 
   402.....
Predicted Secondary structure 


Query SS confidence 





Query Sequence  AILTEN
Query Conservation 
   
 
Alig confidence 





Template Conservation   
    
Template Sequence  EITAEE
Template Known Secondary structure  TS
Template Predicted Secondary structure 


Template SS confidence 





   328.330...
 
Download:Text version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions