Return to main results Retrieve Phyre Job Id

Job DescriptionP23886
Confidence96.96%DateThu Jan 5 11:40:21 GMT 2012
Rank112Aligned Residues156
% Identity12%Templatec3ldaA_
PDB info PDB header:dna binding proteinChain: A: PDB Molecule:dna repair protein rad51; PDBTitle: yeast rad51 h352y filament interface mutant
Resolution2.50 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   363......370.........380.........390.........400.........410.........420.........430.........440..
Predicted Secondary structure 













































Query SS confidence 















































































Query Sequence  VNAGEHIAILGRTGCGKSTLLQQLTRAWDPQQGEILLNDSPIASLNEAALRQTISVVPQRVHLFSATLRDNLLLASPGSS
Query Conservation 
  
    


 








  
 
      
 
   
  
           
  
 
   

  

 


        
Alig confidence 







































.............






................



Template Conservation 
  
 
  
 
 

 


 
 
 

   
   
       .............  

  
................    
Template Sequence  VETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGK. . . . . . . . . . . . . CLYIDTE. . . . . . . . . . . . . . . . GTFR
Template Known Secondary structure  TTSSTTSSTTS
GGGT

SS.............SS................S


Template Predicted Secondary structure 



















.............

................



Template SS confidence 















































































   175....180.........190.........200.........210.... .....220. ....
 
   443......450.........460.........470.........480.........490.........500.........510 ......
Predicted Secondary structure 



























......
Query SS confidence 



































































. . . . . .





Query Sequence  DEALSEILRRVGLEKLLEDAGLNSWLGEGGRQLSGGELRRLAIARALLHDAPLVLLDEPTEGLDATTE. . . . . . SQILEL
Query Conservation              
   
   
  
 
   
  




 


 




     





 

 

    ......  
   
Alig confidence 













































..



















......





Template Conservation    

                 
                        ..    






  
       
   
  
   
Template Sequence  PVRLVSIAQRFGLDPDDALNNVAYARAYNADHQLRLLDAAAQMMSE. . SRFSLIVVDSVMALYRGELSARQMHLAKFMRA
Template Known Secondary structure  TT

T

S..S
TGGGG



Template Predicted Secondary structure 












..








Template SS confidence 















































































   226...230.........240.........250.........260.........270. ........280.........290.........300...
 
   517..520.. .......530.........540.........
Predicted Secondary structure 
..







Query SS confidence 





. .


























Query Sequence  LAEMMR. . EKTVLMVTHRLRGLSRFQQIIVMDNGQ
Query Conservation 
     ..  


 


        
 
  
  
 
Alig confidence 





..


























Template Conservation 

 

    
 

  

          

 
    
Template Sequence  LQRLADQFGVAVVVTNQVNIMAYSSTTRLGFKKGK
Template Known Secondary structure 




S
S
Template Predicted Secondary structure 







Template SS confidence 


































   310.........320.........330.........340....
 
Download:Text version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions